BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0017.p
         (242 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310655|ref|YP_003774747.1| maleate cis-trans isomerase [He...    59   3e-10

>gi|300310655|ref|YP_003774747.1| maleate cis-trans isomerase
           [Herbaspirillum seropedicae SmR1]
          Length = 251

 Score = 59.3 bits (142), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 106/245 (43%), Gaps = 18/245 (7%)

Query: 7   LGMLTPSSNTTLEPVTTAML----ADIPEA-SAHFGRFRVTEIALSNQALAQFDDSEILR 61
           +G + PSSNTT+E    AML    A  PE  + H  R R+ ++    + LA  D  E  R
Sbjct: 8   IGQIVPSSNTTMETEIPAMLTARQAIRPERFTFHSSRMRMKKVV--KEELAAMD-GESDR 64

Query: 62  AAELLSHAKVGSIAWN---GTSSGWLGF--DADERLCRRITEATGI--PACTSVLALNEI 114
            A  LS A+V  + +       +   G+   +++RL    T A G   P  TS  AL + 
Sbjct: 65  CAVELSDARVDVLGYACLVAIMAMGRGYHRQSEQRLTAH-TAANGADAPVVTSAGALIDA 123

Query: 115 FDLTGVKRFGLVTPYLDDVQAAIIKNYAASGLECVSERHLRKQDNFSFSEVGAQELRAMV 174
             + G K+  +V PY+  +   ++      G E +  R L   DN   +      L A+V
Sbjct: 124 LKVIGAKKIVVVAPYMKPLTELVVDYIRHEGYEVLDYRALEIPDNLDVARHDPARLPAIV 183

Query: 175 HEVAKDKPQAITI-FCTNLRGAPLVEELEREVGIPIYDTISTVVWKSLQQAGADPSRIRG 233
            ++   +  AI +  C  +   P++ ++E   G P+        +  L++   D   + G
Sbjct: 184 AQMDTSQVDAIVLSACVQMPSLPVIAQVEAMTGKPVITAAVATTYAMLKRLELD-RIVPG 242

Query: 234 WGSLF 238
            G+L 
Sbjct: 243 AGALL 247


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 738,053
Number of extensions: 28686
Number of successful extensions: 83
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 159
Effective length of database: 1,226,865
Effective search space: 195071535
Effective search space used: 195071535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)