BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0015.p (544 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313067|ref|YP_003777159.1| methyl-accepting chemotaxis tra... 898 0.0 gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis tra... 530 e-152 gi|300311479|ref|YP_003775571.1| methyl-accepting chemotaxis tra... 420 e-118 gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis tra... 352 5e-98 gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis pro... 343 1e-95 >gi|300313067|ref|YP_003777159.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 532 Score = 898 bits (2320), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/485 (89%), Positives = 464/485 (95%) Query: 33 MNRLSLKKKLWLPLVFSWIALLFLSVWHAYQTRDLQIAERQRGLEDVTEMAYTTVAGFAK 92 MN LSLKKKLWLPLVFSW+ALLFLSVWHAYQTRDLQIAER+RGL+DVTEMAYTT+AG+AK Sbjct: 1 MNNLSLKKKLWLPLVFSWMALLFLSVWHAYQTRDLQIAERERGLQDVTEMAYTTIAGYAK 60 Query: 93 LEADGKLSRAEAQQGAIARVRDQRYTGDGYATLVGADSTIVMHPINTKLDGRNMLSFKDA 152 LE+DGKLSR +AQ+ AIAR+RDQRYTGDGY TLV A+S IVMHPIN+KLDGRNML FKDA Sbjct: 61 LESDGKLSREDAQKAAIARIRDQRYTGDGYVTLVDANSVIVMHPINSKLDGRNMLDFKDA 120 Query: 153 KGNELYKMIAAAGASPAGKGFLEYWWPRPGSDKPSPKMGFVKRFKPWNWDLICSVYSDDI 212 KGNELYKMIAA G+S AGKG+LEYWWPRPGSD+PSPKMGFVKRFKPWNWDLICSVYSDDI Sbjct: 121 KGNELYKMIAATGSSGAGKGYLEYWWPRPGSDQPSPKMGFVKRFKPWNWDLICSVYSDDI 180 Query: 213 EADFRRALVQAVVVLVALGVLLSIIAGLVSRNIFRSIGGEPAEAAEMARKIAGGDLTGTI 272 +ADFRRAL+QAVVVL+ LGVLLS+IAG+VSRNIFRSIGGEP EAAEMARKIA GDLTG I Sbjct: 181 QADFRRALIQAVVVLIGLGVLLSLIAGMVSRNIFRSIGGEPGEAAEMARKIAAGDLTGVI 240 Query: 273 RTSGGDQHSLVAAVAYTRDRLVDTVHGIQGATTSIKTSVDEIANGNMDLSNRTEQQAGSL 332 T+ GD+HSLVAAVAYTRDRLVDTVHGI+ AT SIKTSVDEIA GNMDLSNRTEQQAGSL Sbjct: 241 HTTQGDEHSLVAAVAYTRDRLVDTVHGIKQATESIKTSVDEIATGNMDLSNRTEQQAGSL 300 Query: 333 EETASAMEELTSTVKQNAANAQHANELASGAAKVAIQGGEVVDQVVQTMASINASSRKIV 392 EETAS MEELT+TVKQNAANAQHAN+LASGAA+VAIQGGEVV QVVQTM SINASSRKIV Sbjct: 301 EETASTMEELTATVKQNAANAQHANQLASGAAQVAIQGGEVVGQVVQTMESINASSRKIV 360 Query: 393 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLID 452 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLID Sbjct: 361 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLID 420 Query: 453 DSVGKVDAGTHLVQQAGQTMQEVVASIQGVSTVVSEIATASHEQSAGIEQVGEAITQMDE 512 DSVGKVDAGTHLVQ+AGQTMQEVV+SIQGVSTVVSEIATASHEQS+GIEQVGEAITQMDE Sbjct: 421 DSVGKVDAGTHLVQRAGQTMQEVVSSIQGVSTVVSEIATASHEQSSGIEQVGEAITQMDE 480 Query: 513 TTQQN 517 TTQQN Sbjct: 481 TTQQN 485 >gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 609 Score = 530 bits (1366), Expect = e-152, Method: Compositional matrix adjust. Identities = 277/485 (57%), Positives = 352/485 (72%), Gaps = 1/485 (0%) Query: 33 MNRLSLKKKLWLPLVFSWIALLFLSVWHAYQTRDLQIAERQRGLEDVTEMAYTTVAGFAK 92 M +LS KKLWLPLV S IALL +S++ A R++++ ER+ L ++ + A + V G+ Sbjct: 1 MGQLSFNKKLWLPLVLSLIALLAISIFSAVMVRNIRLEERKADLTNIGQTALSLVKGYGA 60 Query: 93 LEADGKLSRAEAQQGAIARVRDQRYTGDGYATLVGADSTIVMHPINTKLDGRNMLSFKDA 152 L G LS+ +AQ+ A ++ RY DGY ++ + IVMHPI T+LDG+++ +FKD Sbjct: 61 LADSGALSKEDAQKLAKQAIKSLRYGTDGYFSISTSGQIIVMHPIKTELDGKDLSNFKDP 120 Query: 153 KGNELYKMIAAAGASPAGKGFLEYWWPRPGSDKPSPKMGFVKRFKPWNWDLICSVYSDDI 212 GN L+ I AG+ P G GF+ Y WP+ G+ +P PK FV +KPW+W+L Y DDI Sbjct: 121 AGNNLFVEITKAGSKPEG-GFVHYLWPKVGAAEPVPKTSFVIAYKPWDWNLTTGAYMDDI 179 Query: 213 EADFRRALVQAVVVLVALGVLLSIIAGLVSRNIFRSIGGEPAEAAEMARKIAGGDLTGTI 272 A F R L Q ++ A+ L + +++ I R+IGG+PA+AAE+A +IA GDLT I Sbjct: 180 NAAFLRTLWQMALLFAAVSAALVALVIVINHGILRTIGGDPAQAAEVANRIAQGDLTPNI 239 Query: 273 RTSGGDQHSLVAAVAYTRDRLVDTVHGIQGATTSIKTSVDEIANGNMDLSNRTEQQAGSL 332 T+ GD SL+ AV RD L+ T+ I+ + +I ++ EIA+GN+DLS RTEQQAGS+ Sbjct: 240 ETAPGDSSSLLYAVRSMRDSLLSTITNIKASAGTIASASQEIASGNLDLSGRTEQQAGSI 299 Query: 333 EETASAMEELTSTVKQNAANAQHANELASGAAKVAIQGGEVVDQVVQTMASINASSRKIV 392 EETASAMEELT+TVKQNA NA+ AN+LA A++VAIQGG VV QVVQTM I SSRKI Sbjct: 300 EETASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVSQVVQTMEGITDSSRKIA 359 Query: 393 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLID 452 DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAKEIK LID Sbjct: 360 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLID 419 Query: 453 DSVGKVDAGTHLVQQAGQTMQEVVASIQGVSTVVSEIATASHEQSAGIEQVGEAITQMDE 512 DSV KVD G+ LV+QAG TM EVVAS++ V+ +V EI++AS EQSAGI +VG AITQMDE Sbjct: 420 DSVAKVDTGSKLVEQAGATMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDE 479 Query: 513 TTQQN 517 TQQN Sbjct: 480 GTQQN 484 >gi|300311479|ref|YP_003775571.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 603 Score = 420 bits (1080), Expect = e-118, Method: Compositional matrix adjust. Identities = 240/483 (49%), Positives = 320/483 (66%), Gaps = 3/483 (0%) Query: 37 SLKKKLWLPLVFSWIALLFLSVWHAYQTRDLQIAERQRGLEDVTEMAYTTVAGFAKLEAD 96 SLK +L LV W LL L+ W A+ R+ I ER+ GL V E A V + A Sbjct: 3 SLKAQLLSALVVMWAGLLLLAAWSAFSARENMIDERKDGLRRVVEAANGVVKSYVADVAA 62 Query: 97 GKLSRAEAQQGAIARVRDQRYTGDGYATLVGADSTIVMHPINTKLDGRNMLSFKDAKGNE 156 G++S+ EAQ+ A+ R+ RY GD Y + + ++M P N + G+N+ KD++G Sbjct: 63 GRVSKEEAQKNALERIAAMRYDGDNYLFIFDSRPVVLMLPSNKAMVGKNVADRKDSEGKA 122 Query: 157 LYKMIAAAGASPAGKGFLEYWWPRPGSDKP--SPKMGFVKRFKPWNWDLICSVYSDDIEA 214 Y + G GF++Y PG+D +PKM +V + W+W ++ V+ D++A Sbjct: 123 YYVEMMKVGQEKQ-HGFVQYMGRLPGTDDSNRTPKMSYVVHNQDWDWFIVTGVFLSDVQA 181 Query: 215 DFRRALVQAVVVLVALGVLLSIIAGLVSRNIFRSIGGEPAEAAEMARKIAGGDLTGTIRT 274 FR L + + +L+ +GV++S++ + R I S+GGEPA A ++A +IA GDLT ++T Sbjct: 182 QFRADLFRLLGILLVVGVVVSVMMLAIIRRITGSLGGEPAYAVDIATRIANGDLTVQVQT 241 Query: 275 SGGDQHSLVAAVAYTRDRLVDTVHGIQGATTSIKTSVDEIANGNMDLSNRTEQQAGSLEE 334 GD SL+ A+A R+RL + GI+ T +I EIA GN+DLS+RTE+QAGSL Sbjct: 242 RPGDTRSLLYAMATMRERLAGVIKGIRQGTDAIDIGAREIAAGNLDLSSRTEEQAGSLAT 301 Query: 335 TASAMEELTSTVKQNAANAQHANELASGAAKVAIQGGEVVDQVVQTMASINASSRKIVDI 394 TAS M+ LT+TVKQNA NA+ A +LA A+ +A +GGEVV QVVQTM I SSRKI DI Sbjct: 302 TASNMDGLTATVKQNADNARQAGQLAHSASDIATRGGEVVGQVVQTMEGITGSSRKIADI 361 Query: 395 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLIDDS 454 I VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LI+DS Sbjct: 362 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKALIEDS 421 Query: 455 VGKVDAGTHLVQQAGQTMQEVVASIQGVSTVVSEIATASHEQSAGIEQVGEAITQMDETT 514 V +V +G+ V +AGQTM EVVA+++ ++ +V EI+ AS EQ GIEQV AI +MD+ T Sbjct: 422 VQRVGSGSDQVARAGQTMGEVVAAVRSLTDIVGEISAASEEQRNGIEQVNLAIGEMDQVT 481 Query: 515 QQN 517 QQN Sbjct: 482 QQN 484 >gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 352 bits (902), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 187/285 (65%), Positives = 229/285 (80%) Query: 236 IIAGLVSRNIFRSIGGEPAEAAEMARKIAGGDLTGTIRTSGGDQHSLVAAVAYTRDRLVD 295 +IA L++R + + +GGEP AA++A++IA GDLT ++T GD SL+ A+ RD LV Sbjct: 201 LIAVLLTRGLLKQLGGEPTYAAQIAQQIADGDLTANVQTKTGDNSSLLFAIKNMRDSLVS 260 Query: 296 TVHGIQGATTSIKTSVDEIANGNMDLSNRTEQQAGSLEETASAMEELTSTVKQNAANAQH 355 V ++ T +I+ + EIA+GN+DLS+RTEQQA SLEETASAMEEL +TVKQNA NA+ Sbjct: 261 IVAQVRQGTFTIEQASSEIASGNLDLSSRTEQQASSLEETASAMEELMTTVKQNADNAKQ 320 Query: 356 ANELASGAAKVAIQGGEVVDQVVQTMASINASSRKIVDIISVIDGIAFQTNILALNAAVE 415 A++LA A++VA QGGEVV QVV TM INASSRKIVDIISVIDGIAFQTNILALNAAVE Sbjct: 321 ASQLAVSASEVASQGGEVVAQVVTTMDGINASSRKIVDIISVIDGIAFQTNILALNAAVE 380 Query: 416 AARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLIDDSVGKVDAGTHLVQQAGQTMQEV 475 AARAGEQGRGFAVVASEVRSLAQRSA AAKEI +LI+DSV +++ G+ LV+QAGQTM+ V Sbjct: 381 AARAGEQGRGFAVVASEVRSLAQRSATAAKEITELINDSVSQIERGSSLVEQAGQTMENV 440 Query: 476 VASIQGVSTVVSEIATASHEQSAGIEQVGEAITQMDETTQQNAAL 520 V S++ V+ VV+EI+ AS EQS GI QV AIT MDE TQQN+AL Sbjct: 441 VNSVKRVTDVVAEISMASQEQSHGITQVNTAITHMDEATQQNSAL 485 >gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 343 bits (881), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 183/295 (62%), Positives = 233/295 (78%), Gaps = 1/295 (0%) Query: 224 VVVLVALGVLLSIIAGL-VSRNIFRSIGGEPAEAAEMARKIAGGDLTGTIRTSGGDQHSL 282 ++++ A+GV+ +++A ++R++ R +GGEP A ++A +IA GDL I T GD SL Sbjct: 196 MLLISAIGVVTAVLAAFWLTRHLLRKLGGEPDYAVQIAGQIAEGDLAVVIDTRAGDHDSL 255 Query: 283 VAAVAYTRDRLVDTVHGIQGATTSIKTSVDEIANGNMDLSNRTEQQAGSLEETASAMEEL 342 +AA+ RD+L V ++ + +I T+ EIA GN+DLS RTEQQAG+LEETAS+ME+L Sbjct: 256 MAAMRVMRDKLAAIVAEVRKGSETITTASSEIARGNLDLSGRTEQQAGALEETASSMEQL 315 Query: 343 TSTVKQNAANAQHANELASGAAKVAIQGGEVVDQVVQTMASINASSRKIVDIISVIDGIA 402 STVKQNA NA AN+LA A+ VA+QGG +V QVVQTM SINASS+K+ DI+SVIDGIA Sbjct: 316 NSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVQTMQSINASSQKVADIVSVIDGIA 375 Query: 403 FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLIDDSVGKVDAGT 462 FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAKEIK LI DSVGKV+ G+ Sbjct: 376 FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKVLIGDSVGKVENGS 435 Query: 463 HLVQQAGQTMQEVVASIQGVSTVVSEIATASHEQSAGIEQVGEAITQMDETTQQN 517 LV+QAG TM ++V SI+ V+ V++EI A+ EQS+GIEQV EAI Q+D+ TQQN Sbjct: 436 KLVEQAGSTMHDIVTSIRRVTDVMTEINHANREQSSGIEQVNEAIIQIDDMTQQN 490 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.130 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,543,065 Number of extensions: 60624 Number of successful extensions: 610 Number of sequences better than 1.0e-08: 71 Number of HSP's gapped: 442 Number of HSP's successfully gapped: 72 Length of query: 544 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 454 Effective length of database: 1,193,720 Effective search space: 541948880 Effective search space used: 541948880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)