BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0009.p
         (292 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313061|ref|YP_003777153.1| 4-hydroxyphenylpyruvate dioxyge...   567   e-163
gi|300311005|ref|YP_003775097.1| 4-hydroxyphenylpyruvate dioxyge...   166   2e-42

>gi|300313061|ref|YP_003777153.1| 4-hydroxyphenylpyruvate
           dioxygenase [Herbaspirillum seropedicae SmR1]
          Length = 293

 Score =  567 bits (1462), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 271/292 (92%), Positives = 284/292 (97%)

Query: 1   MNTIENNPVPTNPLGIDGIEFIEYATTEPLALGAVLERMGFEQVGRHRSREVVLYTQGEM 60
           MNTIENNPVPTNPLGIDGIEFIEYATTEPLALGAVLERMGFEQVGRHRSREVVLYTQGEM
Sbjct: 2   MNTIENNPVPTNPLGIDGIEFIEYATTEPLALGAVLERMGFEQVGRHRSREVVLYTQGEM 61

Query: 61  NVIVNADVSAWSGFDHEVQATNLSAIALRVRDANEAYRRVTELGAWPIPTRAGAMELNIP 120
           NVIVNAD +AW+GFDHEVQAT+LSAIALRVRDANEAYRRVTELGAW IPTRAGAMELNIP
Sbjct: 62  NVIVNADATAWAGFDHEVQATSLSAIALRVRDANEAYRRVTELGAWAIPTRAGAMELNIP 121

Query: 121 GVHGCGDSIIYFVDRYRDFSIYDVDFKPSSQERRKTTALSGMHFFGLVQAVGPERTREWI 180
           GVHGCGDSIIYFVDRYRDFSIYDVDFKP+SQERR+T+AL+G+HFFGLVQAV P+R REWI
Sbjct: 122 GVHGCGDSIIYFVDRYRDFSIYDVDFKPASQERRQTSALAGLHFFGLVQAVQPDRLREWI 181

Query: 181 DFYSSLMGFSVLPEGQFFGILPKGNLLASPCRQFYIQLVEPPEGTEDIHWEEEWLRLGLG 240
           DFYS+LMGFSVLPEGQFFGILPKG+LL SPCRQFYIQLVEPP GTEDIHWEEE LRLGLG
Sbjct: 182 DFYSTLMGFSVLPEGQFFGILPKGSLLVSPCRQFYIQLVEPPAGTEDIHWEEELLRLGLG 241

Query: 241 TPDVLQAVRQLQERGVIFVDRAPTQISERGALTQLYKGGVSFELVRSQKDKN 292
           TPDVLQAVRQLQERGV+FVDRAPTQISERGALTQLYKGGVSFELVRSQK+K 
Sbjct: 242 TPDVLQAVRQLQERGVVFVDRAPTQISERGALTQLYKGGVSFELVRSQKEKK 293


>gi|300311005|ref|YP_003775097.1| 4-hydroxyphenylpyruvate
           dioxygenase-like protein [Herbaspirillum seropedicae
           SmR1]
          Length = 364

 Score =  166 bits (420), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 102/285 (35%), Positives = 145/285 (50%), Gaps = 26/285 (9%)

Query: 1   MNTIENNPVPT-------NPLGIDGIEFIEYATTEPLALGAVLERMGFEQVGRHRSREVV 53
           M   E N  P        NP+G DG EF+EY   +P A+  VLE MGF  V RHRS+ V 
Sbjct: 1   MGHTETNFAPAASGDLFDNPMGTDGFEFVEYTAADPAAIARVLELMGFTAVARHRSKNVT 60

Query: 54  LYTQGEMNVIVNADVSAWSGFDHEVQATNLSAIALRVRDANEAYRRVTELGAWPIPTRAG 113
           LY QG++N I+N +  + +    +V   +++A+A RV+DA + Y+R  ELGA  +  + G
Sbjct: 61  LYRQGQVNFILNGEPGSNAAAFAQVHGASVNAMAFRVKDAAQVYKRALELGAEGVEAKLG 120

Query: 114 AMELNIPGVHGCGDSIIYFVDRY-RDFSIYDVDFKPSSQERRKTTALSGMHFFGLVQAVG 172
            MELNIP + G G S++Y VDRY  + SIYDVDF+      R    +   +   L   V 
Sbjct: 121 PMELNIPAIRGIGGSLLYLVDRYGENGSIYDVDFQFFPGVERNPKGVGLTYIDHLTHNVM 180

Query: 173 PERTREWIDFYSSLMGFSVLP----EGQFFGILPKGNLLASPCRQFYIQLVEPPEGTEDI 228
                 W  FY+ L  F  +     EG+  G+  +   + SPC +  I + E  +    I
Sbjct: 181 RGAMDTWSSFYTRLFNFREIKYFDIEGKVTGL--RSRAMTSPCGKIRIPINESADDKSQI 238

Query: 229 HWEEEWLR---------LGLGTPDVLQAVRQLQERGVIFVDRAPT 264
              EE+++         + LGT D+ Q VR L+ERGV   D   T
Sbjct: 239 ---EEFIKQYNGEGIQHIALGTDDIYQTVRALRERGVPLQDTIST 280


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 960,732
Number of extensions: 41564
Number of successful extensions: 102
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 2
Length of query: 292
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 208
Effective length of database: 1,222,130
Effective search space: 254203040
Effective search space used: 254203040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)