BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0250.p (499 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311037|ref|YP_003775129.1| methyl-accepting chemotaxis tra... 708 0.0 gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis tra... 582 e-167 gi|300313014|ref|YP_003777106.1| methyl-accepting chemotaxis tra... 565 e-162 gi|300313891|ref|YP_003777983.1| methyl-accepting chemotaxis I p... 504 e-144 gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis pro... 382 e-107 >gi|300311037|ref|YP_003775129.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 522 Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/485 (78%), Positives = 425/485 (87%) Query: 11 GINGLRSSVERANEVQNESLAPLYVAREALDQTGIAARNAYVFLSDADAQTELKIVDEQK 70 GIN LR ++ AN+++NE L PLY+AREALDQTGIAARNAYVF+SDADA+ EL IVDEQK Sbjct: 34 GINSLRETIVYANKLKNEQLEPLYLAREALDQTGIAARNAYVFVSDADAKNELNIVDEQK 93 Query: 71 ALYLAELQKLETRLAGNPHFAAVRTGLLQMADELKRPRQYRESGAMEAYRSFLVNDCSPL 130 A+YL +LQ LE RLA FAAVR GLLQMA+ELKRPR+YR+SGAMEAYR FLVN+CSPL Sbjct: 94 AIYLQQLQLLEPRLADRAGFAAVREGLLQMAEELKRPRRYRDSGAMEAYRDFLVNECSPL 153 Query: 131 RRKIVADINQLIADIAGQSTAAGEQSERSATHALKLIATLAVVAILIAVAVAVVITRGLL 190 RRKIVA+INQLI I+ +ST AG+ +E +A AL I+ LA +A+LIAV +A ITR LL Sbjct: 154 RRKIVANINQLIDQISAESTTAGDTAENAAKQALLFISLLAGLALLIAVVIAFFITRSLL 213 Query: 191 RQLGGEPAYAMEIAQRIAHGDLAVEVATRSNDKSSLLHALRMMRDSLAAIVGEVRQGTDA 250 RQLGGEPAYAM IAQRIAHGDLAV+V TRS+D+SSLL+A++MMRDSL+ IV +VRQGTD+ Sbjct: 214 RQLGGEPAYAMGIAQRIAHGDLAVDVVTRSHDQSSLLYAIKMMRDSLSRIVAQVRQGTDS 273 Query: 251 IERASTEIASGNVDLSGRTERQASSLEETASAMEQITSAVRQSAANAEQANTLAASASEI 310 IERA +EI+SGN DLSGRTERQASSLEETASAMEQITSAVRQSA NA QAN LA SAS I Sbjct: 274 IERACSEISSGNADLSGRTERQASSLEETASAMEQITSAVRQSADNAIQANQLAGSASSI 333 Query: 311 AVTGGNMMGEVVATMEDIRQSSVKIVDIISVIDGIAFQTNILALNAAVEAARAGEGGRGF 370 A+ GG MMG+VVATMEDI SSVKIVDIISVIDGIAFQTNILALNAAVEAARAGEGGRGF Sbjct: 334 ALKGGQMMGDVVATMEDIHHSSVKIVDIISVIDGIAFQTNILALNAAVEAARAGEGGRGF 393 Query: 371 AVVASEVRTLAQRSAAAAKEIKELIGASVAKVESGSGRVKGAGQTMDEIVASVRKVTDVI 430 AVVASEVRTLAQRSAAAAKEIKELI ASVAKVESGSG VKGAG+TM E+V SV+ V+ VI Sbjct: 394 AVVASEVRTLAQRSAAAAKEIKELISASVAKVESGSGLVKGAGETMGELVGSVQNVSKVI 453 Query: 431 AEISLSSREQSEGIEQVNDAIGHMDEATQQNSALVEQAAAAAEALTSQAGALARLVSTFK 490 AEI+ SSREQS GIEQVNDAI HMDE TQQNSALVEQ+AAAAEALT+QA +LARLVSTFK Sbjct: 454 AEITASSREQSTGIEQVNDAISHMDEVTQQNSALVEQSAAAAEALTAQAQSLARLVSTFK 513 Query: 491 LAPAA 495 +AP A Sbjct: 514 VAPDA 518 >gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 582 bits (1501), Expect = e-167, Method: Compositional matrix adjust. Identities = 310/490 (63%), Positives = 390/490 (79%) Query: 2 LVLVGVAMVGINGLRSSVERANEVQNESLAPLYVAREALDQTGIAARNAYVFLSDADAQT 61 +++ G+++ I L SS++ VQ++ LAPLY AREALDQTGIAARNAYVF SDADAQ Sbjct: 23 ILVSGISLSSIRALTSSIKAVLAVQDQKLAPLYAAREALDQTGIAARNAYVFRSDADAQK 82 Query: 62 ELKIVDEQKALYLAELQKLETRLAGNPHFAAVRTGLLQMADELKRPRQYRESGAMEAYRS 121 EL IVDEQK LYL ++ L AGN F VR+G+LQMA+ELKRPR YRESG E YR Sbjct: 83 ELAIVDEQKQLYLKAIKDLGPLFAGNKEFEKVRSGMLQMAEELKRPRLYRESGRSEEYRD 142 Query: 122 FLVNDCSPLRRKIVADINQLIADIAGQSTAAGEQSERSATHALKLIATLAVVAILIAVAV 181 FLVN+CSPLRR+IV+DI ++A + ++ A + +++ A A +A L +V ++I++ + Sbjct: 143 FLVNECSPLRRQIVSDIGTVLAQVEAENNRAQDATDKMAQLAALTVAVLTLVVVVISILI 202 Query: 182 AVVITRGLLRQLGGEPAYAMEIAQRIAHGDLAVEVATRSNDKSSLLHALRMMRDSLAAIV 241 AV++TRGLL+QLGGEP YA +IAQ+IA GDL V T++ D SSLL A++ MRDSL +IV Sbjct: 203 AVLLTRGLLKQLGGEPTYAAQIAQQIADGDLTANVQTKTGDNSSLLFAIKNMRDSLVSIV 262 Query: 242 GEVRQGTDAIERASTEIASGNVDLSGRTERQASSLEETASAMEQITSAVRQSAANAEQAN 301 +VRQGT IE+AS+EIASGN+DLS RTE+QASSLEETASAME++ + V+Q+A NA+QA+ Sbjct: 263 AQVRQGTFTIEQASSEIASGNLDLSSRTEQQASSLEETASAMEELMTTVKQNADNAKQAS 322 Query: 302 TLAASASEIAVTGGNMMGEVVATMEDIRQSSVKIVDIISVIDGIAFQTNILALNAAVEAA 361 LA SASE+A GG ++ +VV TM+ I SS KIVDIISVIDGIAFQTNILALNAAVEAA Sbjct: 323 QLAVSASEVASQGGEVVAQVVTTMDGINASSRKIVDIISVIDGIAFQTNILALNAAVEAA 382 Query: 362 RAGEGGRGFAVVASEVRTLAQRSAAAAKEIKELIGASVAKVESGSGRVKGAGQTMDEIVA 421 RAGE GRGFAVVASEVR+LAQRSA AAKEI ELI SV+++E GS V+ AGQTM+ +V Sbjct: 383 RAGEQGRGFAVVASEVRSLAQRSATAAKEITELINDSVSQIERGSSLVEQAGQTMENVVN 442 Query: 422 SVRKVTDVIAEISLSSREQSEGIEQVNDAIGHMDEATQQNSALVEQAAAAAEALTSQAGA 481 SV++VTDV+AEIS++S+EQS GI QVN AI HMDEATQQNSALVE+AAAAA ++ QAGA Sbjct: 443 SVKRVTDVVAEISMASQEQSHGITQVNTAITHMDEATQQNSALVEEAAAAANSMKEQAGA 502 Query: 482 LARLVSTFKL 491 L+ LV+TF+L Sbjct: 503 LSGLVATFRL 512 >gi|300313014|ref|YP_003777106.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 553 Score = 565 bits (1455), Expect = e-162, Method: Compositional matrix adjust. Identities = 313/500 (62%), Positives = 386/500 (77%), Gaps = 6/500 (1%) Query: 6 GVAMVGINGLRSSVERANEVQNESLAPLYVAREALDQTGIAARNAYVFLSDADAQTELKI 65 G+++ IN L S++ A++VQ E L PLY+AREALDQTG+AARNAYVF ++ADAQ EL I Sbjct: 37 GISLFSINRLTGSIKAADDVQVERLLPLYLAREALDQTGLAARNAYVFRTEADAQKELAI 96 Query: 66 VDEQKALYLAELQKLETRLAGNPHFAAVRTGLLQMADELKRPRQYRESGAMEAYRSFLVN 125 VDEQK +YL L+ +E G+ F VRTGLLQMA+ELKRPR YRESG ME +R FLVN Sbjct: 97 VDEQKQIYLKALKDMEPHFVGHKGFDKVRTGLLQMAEELKRPRIYRESGKMEEFRDFLVN 156 Query: 126 DCSPLRRKIVADINQLIADIAGQSTAAGEQSERSATHALKLIATLAVVAILIAVAVAVVI 185 +CSPLRR+IV DIN++I + + A + + A A L+A L + +I+ VA VI Sbjct: 157 ECSPLRRQIVLDINKVIEEADADNIKAHQTTVDMAAMASSLVAVLTGIVAVISALVAFVI 216 Query: 186 TRGLLRQLGGEPAYAMEIAQRIAHGDLAVEVATRSNDKSSLLHALRMMRDSLAAIVGEVR 245 TR LL+QLGGEPAYA +IAQ+IA GDL +V + D +SLL A++ MRD+LAAIVG+VR Sbjct: 217 TRSLLKQLGGEPAYAADIAQQIASGDLTADVDAKPGDTTSLLFAIKKMRDNLAAIVGKVR 276 Query: 246 QGTDAIERASTEIASGNVDLSGRTERQASSLEETASAMEQITSAVRQSAANAEQANTLAA 305 +GT AIE+AS EIA+GN+DLS RTE+QA +LEETASAME++ S V+Q+A NA QA+ LA Sbjct: 277 EGTHAIEQASAEIATGNMDLSSRTEQQAGALEETASAMEELMSTVKQNADNARQASQLAV 336 Query: 306 SASEIAVTGGNMMGEVVATMEDIRQSSVKIVDIISVIDGIAFQTNILALNAAVEAARAGE 365 SAS++A GG ++G+VV+TME I SS KIVDIISVIDGIAFQTNILALNAAVEAARAGE Sbjct: 337 SASDVASQGGQVVGQVVSTMEGINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGE 396 Query: 366 GGRGFAVVASEVRTLAQRSAAAAKEIKELIGASVAKVESGSGRVKGAGQTMDEIVASVRK 425 GRGFAVVASEVR+LAQRSA AAKEI +LI SV ++E GS V AG TM+ +V SV++ Sbjct: 397 QGRGFAVVASEVRSLAQRSATAAKEITDLINDSVGQIEQGSSLVGQAGATMENVVTSVKR 456 Query: 426 VTDVIAEISLSSREQSEGIEQVNDAIGHMDEATQQNSALVEQAAAAAEALTSQAGALARL 485 VTDV+AEIS +S+EQS GI QVN AI HMDEATQQNSALVE+AAAAA ++ +QA LA L Sbjct: 457 VTDVVAEISHASQEQSHGIAQVNLAITHMDEATQQNSALVEEAAAAANSMKTQAEQLAGL 516 Query: 486 VSTFKLA------PAARVMG 499 VSTFKLA P + V+G Sbjct: 517 VSTFKLAHSPAPGPVSAVVG 536 >gi|300313891|ref|YP_003777983.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 544 Score = 504 bits (1299), Expect = e-144, Method: Compositional matrix adjust. Identities = 276/494 (55%), Positives = 371/494 (75%) Query: 1 MLVLVGVAMVGINGLRSSVERANEVQNESLAPLYVAREALDQTGIAARNAYVFLSDADAQ 60 ML+L+ A++ +N + ++V+ V + L PLYVAREALDQTG+AARNAY+F A+A Sbjct: 24 MLILITFALMRMNAISAAVQYQETVTDTKLEPLYVAREALDQTGLAARNAYIFHDQAEAL 83 Query: 61 TELKIVDEQKALYLAELQKLETRLAGNPHFAAVRTGLLQMADELKRPRQYRESGAMEAYR 120 EL ++D+QKALYL L++LE LAG F + GLL MA+ELKRPR+YRESG MEAY Sbjct: 84 KELALLDQQKALYLDALRQLEPVLAGQAQFEKAKAGLLAMAEELKRPRKYRESGQMEAYG 143 Query: 121 SFLVNDCSPLRRKIVADINQLIADIAGQSTAAGEQSERSATHALKLIATLAVVAILIAVA 180 FLV +CSPLRR+IV DI+ L+ + ++ AAG++++ +L+LI A + + +++A Sbjct: 144 EFLVKECSPLRRQIVQDIDALLKVVQRETKAAGDRADALFASSLRLIMACAAIILGVSIA 203 Query: 181 VAVVITRGLLRQLGGEPAYAMEIAQRIAHGDLAVEVATRSNDKSSLLHALRMMRDSLAAI 240 A +I + LL QLGGEP YA+EI RIAHG+L+ V T D+SSLL+ +R+MRD LA++ Sbjct: 204 TAWLIRKSLLGQLGGEPRYAVEITGRIAHGELSAPVDTAPGDRSSLLYEIRVMRDKLASL 263 Query: 241 VGEVRQGTDAIERASTEIASGNVDLSGRTERQASSLEETASAMEQITSAVRQSAANAEQA 300 V +VR GT AI AS+EIA GN +LS RTE+QA +LE+T +AM+++T AVR++A NA+QA Sbjct: 264 VQQVRVGTHAIADASSEIAVGNQNLSERTEQQADTLEKTVAAMDELTQAVRRNADNAQQA 323 Query: 301 NTLAASASEIAVTGGNMMGEVVATMEDIRQSSVKIVDIISVIDGIAFQTNILALNAAVEA 360 LA SAS++A G ++ +VV TM I SS KIVDII VIDGIAFQTNILALNAAVEA Sbjct: 324 KHLAGSASDVASQAGTVVQQVVDTMGQIDASSRKIVDIIGVIDGIAFQTNILALNAAVEA 383 Query: 361 ARAGEGGRGFAVVASEVRTLAQRSAAAAKEIKELIGASVAKVESGSGRVKGAGQTMDEIV 420 ARAGE GRGFAVVA+EVR+LAQRSA+AA+EIK LI +SV+ V GS V+ AG TM ++V Sbjct: 384 ARAGEQGRGFAVVAAEVRSLAQRSASAAREIKSLIDSSVSSVTDGSRLVEQAGATMQDVV 443 Query: 421 ASVRKVTDVIAEISLSSREQSEGIEQVNDAIGHMDEATQQNSALVEQAAAAAEALTSQAG 480 SV++V+ V+ EIS +S+ QS+GI +VN AI +DE TQQN+ALVE+AAAA+++++ QA Sbjct: 444 ESVQRVSAVVVEISAASQAQSDGILEVNTAIARLDENTQQNAALVEEAAAASQSMSQQAD 503 Query: 481 ALARLVSTFKLAPA 494 L +LV FKL+PA Sbjct: 504 HLNQLVGAFKLSPA 517 >gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 382 bits (981), Expect = e-107, Method: Compositional matrix adjust. Identities = 244/502 (48%), Positives = 327/502 (65%), Gaps = 24/502 (4%) Query: 6 GVAMVGINGLRSSVERANEVQNESLAPLYVAREALDQTGIAARNAYVFLSDADAQTELKI 65 G + ++ ++ EV+N A + E + + I+ RN + + D E + Sbjct: 27 GFGIFNMHQVQGRFTHVVEVKNPESALVKEMLETVGERSISLRNLMLPAAPEDVDIEAQY 86 Query: 66 VDEQKALYLAELQKLETRLAGN-----------PHFAAVRTG---LLQMADELKRPRQYR 111 ++ Q Y QKL+ A + P AA + L+ A E + R Sbjct: 87 IEAQSLKYKMAAQKLQQLFAESSDTSDEEKAALPKIAAQASKAEKLINEAVEFGKRR--- 143 Query: 112 ESGAMEAYR--SFLVNDCSPLRRKIVADINQLIADIAGQSTAAGEQSERSATHALKLIAT 169 EAY FL P+++ ++ L A + A E S + + A L+ Sbjct: 144 -----EAYELAQFLKEQYLPVQKSWQVELKALAALEDQLNKEAAEASAVAYSRARMLMLL 198 Query: 170 LAVVAILIAVAVAVVITRGLLRQLGGEPAYAMEIAQRIAHGDLAVEVATRSNDKSSLLHA 229 ++ + ++ AV A +TR LLR+LGGEP YA++IA +IA GDLAV + TR+ D SL+ A Sbjct: 199 ISAIGVVTAVLAAFWLTRHLLRKLGGEPDYAVQIAGQIAEGDLAVVIDTRAGDHDSLMAA 258 Query: 230 LRMMRDSLAAIVGEVRQGTDAIERASTEIASGNVDLSGRTERQASSLEETASAMEQITSA 289 +R+MRD LAAIV EVR+G++ I AS+EIA GN+DLSGRTE+QA +LEETAS+MEQ+ S Sbjct: 259 MRVMRDKLAAIVAEVRKGSETITTASSEIARGNLDLSGRTEQQAGALEETASSMEQLNST 318 Query: 290 VRQSAANAEQANTLAASASEIAVTGGNMMGEVVATMEDIRQSSVKIVDIISVIDGIAFQT 349 V+Q+A NA QAN LA +AS++AV GG+++ +VV TM+ I SS K+ DI+SVIDGIAFQT Sbjct: 319 VKQNAENAHQANDLALAASDVAVQGGSIVSQVVQTMQSINASSQKVADIVSVIDGIAFQT 378 Query: 350 NILALNAAVEAARAGEGGRGFAVVASEVRTLAQRSAAAAKEIKELIGASVAKVESGSGRV 409 NILALNAAVEAARAGE GRGFAVVASEVR+LAQRSA+AAKEIK LIG SV KVE+GS V Sbjct: 379 NILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKVLIGDSVGKVENGSKLV 438 Query: 410 KGAGQTMDEIVASVRKVTDVIAEISLSSREQSEGIEQVNDAIGHMDEATQQNSALVEQAA 469 + AG TM +IV S+R+VTDV+ EI+ ++REQS GIEQVN+AI +D+ TQQN+ALVEQAA Sbjct: 439 EQAGSTMHDIVTSIRRVTDVMTEINHANREQSSGIEQVNEAIIQIDDMTQQNAALVEQAA 498 Query: 470 AAAEALTSQAGALARLVSTFKL 491 AAA +L QA L +LVS F+L Sbjct: 499 AAARSLQEQAAGLQQLVSVFRL 520 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.126 0.319 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,056,184 Number of extensions: 35428 Number of successful extensions: 443 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 259 Number of HSP's successfully gapped: 71 Length of query: 499 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 410 Effective length of database: 1,198,455 Effective search space: 491366550 Effective search space used: 491366550 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 132 (55.5 bits)