BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0242.p
         (191 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309887|ref|YP_003773979.1| hypothetical protein Hsero_0552...   193   9e-51

>gi|300309887|ref|YP_003773979.1| hypothetical protein Hsero_0552
           [Herbaspirillum seropedicae SmR1]
          Length = 185

 Score =  193 bits (490), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 101/173 (58%), Positives = 123/173 (71%), Gaps = 9/173 (5%)

Query: 17  LTYVELWRGAEVLIRKAGEEQSGSRWVYLSVLMMLSFCLEAYLNHAGPLLFGAGWNEGRQ 76
           LTY ELW GA+VLIRKAGE+++ SRWV+LS L+MLS CLEAYLNHAGPLLFG+ W+EG Q
Sbjct: 17  LTYAELWHGADVLIRKAGEDEASSRWVFLSALLMLSLCLEAYLNHAGPLLFGSTWSEGPQ 76

Query: 77  AHGTQDARSKLLLICAACGVELEPPRKYRTVALTLLELRHSLGQATQVRLPPPGISTARR 136
           A   ++ R++L LIC ACGVE    RKY TVA TL++LR SL  A Q RL     + A  
Sbjct: 77  ALVHKNVRARLALICTACGVEWSARRKYWTVASTLIDLRTSLVLARQTRLN----AAADT 132

Query: 137 SLSAMAGDPDELALDPAWSPYCERSVVLDYRAQLRSLLAKLHARLPPEERSPL 189
                +G      +DP+WSPYC R+VVLDYRA+LRSLLA +H RLP + R  L
Sbjct: 133 RTQEQSG-----VVDPSWSPYCNRAVVLDYRAELRSLLASIHGRLPAQGRGNL 180


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 643,209
Number of extensions: 25007
Number of successful extensions: 71
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 111
Effective length of database: 1,241,070
Effective search space: 137758770
Effective search space used: 137758770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)