BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0219.p
         (203 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309868|ref|YP_003773960.1| membrane transport protein [Her...   233   7e-63

>gi|300309868|ref|YP_003773960.1| membrane transport protein
           [Herbaspirillum seropedicae SmR1]
          Length = 626

 Score =  233 bits (595), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 121/136 (88%), Positives = 126/136 (92%)

Query: 5   KTSAFSRLSSTTLLGAAVVLGMLYFGRDILAPLAVAGIASLIILPLVRKLDALGMNRAAA 64
           K SA SR +STTLLGAAV LGMLYFGR+ILAPLAVAGIASLIILPLVRKLDALG+NRA A
Sbjct: 6   KASALSRFNSTTLLGAAVALGMLYFGREILAPLAVAGIASLIILPLVRKLDALGLNRAGA 65

Query: 65  AMVSVLLVGGCLVALAVVLTFQLVSVTSDLPQYREGIQDKVESVRAMAERPFARLEAELS 124
           A+VSVLLVG CLVALAVVL FQLVSVTSDLPQYRE IQDKVESVRAM ERPFARLEAELS
Sbjct: 66  AIVSVLLVGSCLVALAVVLAFQLVSVTSDLPQYREAIQDKVESVRAMTERPFARLEAELS 125

Query: 125 AVIPQPVPESARSGKK 140
           AVIPQPVPE+ RSGKK
Sbjct: 126 AVIPQPVPETTRSGKK 141


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.134    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 420,514
Number of extensions: 12169
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,236,335
Effective search space: 150832870
Effective search space used: 150832870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)