BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0201.p
         (545 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309860|ref|YP_003773952.1| hypothetical protein Hsero_0525...   986   0.0  

>gi|300309860|ref|YP_003773952.1| hypothetical protein Hsero_0525
           [Herbaspirillum seropedicae SmR1]
          Length = 545

 Score =  986 bits (2549), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/545 (91%), Positives = 527/545 (96%)

Query: 1   MNQATPQPLSFAFDRASGELSATWQPVQGFPPLTLAFLKQAMTDHGLTKLFFQDSVLNGF 60
           MNQA PQPLSFAFDRASGELSAT+ P++GFPPLTLAFLKQAMTDHGLTKLFFQDSVLN F
Sbjct: 1   MNQANPQPLSFAFDRASGELSATFTPMEGFPPLTLAFLKQAMTDHGLTKLFFQDSVLNAF 60

Query: 61  VRKAEDAKEPVTQVIAERRDGEFSLDVSDDLMTASLTLVPPYGGRAKSVEVVNAIRAAGI 120
           VRKAE AKE V+QVIAERRDGEF+L+V+DDLMTASLTLVPPYGGRAKSVEVVNAIRAAGI
Sbjct: 61  VRKAEGAKEAVSQVIAERRDGEFALEVADDLMTASLTLVPPYGGRAKSVEVVNAIRAAGI 120

Query: 121 TYGILHEQLRGALSAGFCNKLVVAQGLMPTPAEPARFESLLEEKEEELADIDEDAVVSYA 180
           +YGILHE LR ALSAG CNKLV+AQGLMPTPAEPARFESLLEEKEEELADIDEDAVVSYA
Sbjct: 121 SYGILHETLRHALSAGQCNKLVIAQGLMPTPAEPARFESLLEEKEEELADIDEDAVVSYA 180

Query: 181 DMGHILLVKVGDPLMRRTPPVPGQDGIDIRGGKVPARPIADVPFSKECIGAEPSEEDPDL 240
           DMGHIL V VGDPLMRR PPVPGQDGIDIRGGKVPARPIAD+ F+KEC+GAEPS +DPDL
Sbjct: 181 DMGHILQVSVGDPLMRRIPPVPGQDGIDIRGGKVPARPIADIGFAKECVGAEPSPDDPDL 240

Query: 241 LVAIVPGQPTVIKNGVKVNPVLDVENVDLSTGNLSFEGTVRVSGDVLTGMKMNVGGDVVI 300
           L+A+VPGQP++IKNGVKVNPV+DVENVDLSTGNL+FEGTVRVSGDV+TGMK++VGGDVV+
Sbjct: 241 LIAMVPGQPSLIKNGVKVNPVIDVENVDLSTGNLTFEGTVRVSGDVMTGMKLHVGGDVVV 300

Query: 301 NGTVEAAEIVAGGSVTVKGGVIGHSEGVTAQAGTTAIASRISSQKSVQVMFAESAHIEAA 360
           NGTVEAAEIVAGGSVTVKGGVIGHSEGV A AGTTAIASRISSQKSVQVMFAESAHIEAA
Sbjct: 301 NGTVEAAEIVAGGSVTVKGGVIGHSEGVAAGAGTTAIASRISSQKSVQVMFAESAHIEAA 360

Query: 361 DDILVLGNARHCELLAGNEITVGKGNPRTGHIIGGRVEATNIIRANVIGASTTTHTRVQV 420
           DDILVLGNARHCELLAGNEITVGKGNPRTGHIIGGRVEATNIIRANVIGA T  HTR+QV
Sbjct: 361 DDILVLGNARHCELLAGNEITVGKGNPRTGHIIGGRVEATNIIRANVIGAPTAAHTRIQV 420

Query: 421 GLDPYLEEKIAIKEQEYTRKVAELDRTIKQQSYYKLNPEKATPELLHETSDKRKALAYEV 480
           GLDPYLEEKIAIKEQEY+RKVAELDRTIKQQSYYKLNP+KATPELLHETSDKRKALAYEV
Sbjct: 421 GLDPYLEEKIAIKEQEYSRKVAELDRTIKQQSYYKLNPDKATPELLHETSDKRKALAYEV 480

Query: 481 KVLLEEVSQMKEGMVAAEDARIIVAKAVYEGTELRIGHEVWPVQSDLGGGTAQLFEGDIR 540
           KVLLEEVSQMKEGMVAAEDARIIVAKAV+EGTELRIGHEVWPVQSDLGGGTAQLFEGDIR
Sbjct: 481 KVLLEEVSQMKEGMVAAEDARIIVAKAVHEGTELRIGHEVWPVQSDLGGGTAQLFEGDIR 540

Query: 541 YNPKK 545
           YNPKK
Sbjct: 541 YNPKK 545


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.134    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,702,870
Number of extensions: 71779
Number of successful extensions: 180
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 455
Effective length of database: 1,193,720
Effective search space: 543142600
Effective search space used: 543142600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 133 (55.8 bits)