BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0198.p
         (370 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309858|ref|YP_003773950.1| Na+-dependent transporter prote...   481   e-137
gi|300312029|ref|YP_003776121.1| Na+-dependent transporter prote...   349   3e-97

>gi|300309858|ref|YP_003773950.1| Na+-dependent transporter protein
           [Herbaspirillum seropedicae SmR1]
          Length = 305

 Score =  481 bits (1238), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 269/305 (88%), Positives = 285/305 (93%)

Query: 66  MHIASNAAISLLFFLHGAKLSREAALSGLKQPRLHLLTLASTFILFPLLGLALKSAVPDL 125
           MH+ASN AISLLFFLHGAKLSREAAL+GLKQPRLHLLTL STF+LFPLLGL LK+  PDL
Sbjct: 1   MHVASNVAISLLFFLHGAKLSREAALAGLKQPRLHLLTLGSTFLLFPLLGLGLKAVAPDL 60

Query: 126 LTPQLWMGVLFVCTLSSTVQSSIGFTSIARGNVPAAICGATASNLLGIIITPLLVTLLLH 185
           LTPQLWMGVLFVCTLSSTVQSSIGFTSIARGNVPAAICGATASNLLGI++TPLLVTLLLH
Sbjct: 61  LTPQLWMGVLFVCTLSSTVQSSIGFTSIARGNVPAAICGATASNLLGILVTPLLVTLLLH 120

Query: 186 RHHEANGMSQVLSILLQLLLPFVLGNLMRPWIGDWINRHKVIVNVVDRGGILLSVYAAFS 245
           RHHEANG+SQVLSILLQLLLPFVLGNL+RPWIGDWINRHKVIVNVVDRGGILLSVYAAFS
Sbjct: 121 RHHEANGLSQVLSILLQLLLPFVLGNLLRPWIGDWINRHKVIVNVVDRGGILLSVYAAFS 180

Query: 246 VAVAQGVWHLFPPGQLALLVLVNAVLLGTVLLVTTYGARALKMPRGDEIVLVFCGSKKSL 305
            AVAQG+WHLFPPGQLALLVLVNA+LLG VLL+TTYGARALKMPRGDEIVLVFCGSKKSL
Sbjct: 181 AAVAQGIWHLFPPGQLALLVLVNAMLLGAVLLITTYGARALKMPRGDEIVLVFCGSKKSL 240

Query: 306 ASGIPIASVLFAGSGAAVVLLPIMLFHQMQLMLCAVLARRYAARQESEQTGEHPQQKGVP 365
           ASGIPIASVLFAGSGAAVVLLPIMLFHQMQLMLCAVLARRYAA+Q+     +   Q+   
Sbjct: 241 ASGIPIASVLFAGSGAAVVLLPIMLFHQMQLMLCAVLARRYAAQQDHLDADDASSQRAAT 300

Query: 366 AAATR 370
            A +R
Sbjct: 301 LAGSR 305


>gi|300312029|ref|YP_003776121.1| Na+-dependent transporter protein
           [Herbaspirillum seropedicae SmR1]
          Length = 335

 Score =  349 bits (895), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 179/333 (53%), Positives = 227/333 (68%), Gaps = 2/333 (0%)

Query: 33  AMNRFLPDRFTQLLIGTVLLATFFPATGSFEHFMHIASNAAISLLFFLHGAKLSREAALS 92
           A  RFLPD  T LL+  V+ A+  P TG         +   I LLFF+HGAKLSREA ++
Sbjct: 2   ARPRFLPDNMTLLLLAVVVTASLLPCTGQVAEVFDGLTTFMIGLLFFMHGAKLSREAVVA 61

Query: 93  GLKQPRLHLLTLASTFILFPLLGLALKSAVPDLLTPQLWMGVLFVCTLSSTVQSSIGFTS 152
           G    +LH+  L  TF LFPL+GLA K  +   +TP+L++G+LF+C L STVQSSI FTS
Sbjct: 62  GFTHWKLHVTVLLCTFALFPLVGLAFKPLLTPFITPELYLGLLFLCVLPSTVQSSIAFTS 121

Query: 153 IARGNVPAAICGATASNLLGIIITPLLVTLLLHRHHEA--NGMSQVLSILLQLLLPFVLG 210
           +ARGNVPAAIC A+ASNLLGI +TPLLV  L+  H  A  + +  +L I+ QLLLPFV G
Sbjct: 122 VARGNVPAAICAASASNLLGIFLTPLLVGALVVAHEGAGHSSLDSILKIVYQLLLPFVAG 181

Query: 211 NLMRPWIGDWINRHKVIVNVVDRGGILLSVYAAFSVAVAQGVWHLFPPGQLALLVLVNAV 270
            + RPWIG WI R+K  +  VD+  ILL VY AFS AV QG+WH  P   L  L+++NAV
Sbjct: 182 QIARPWIGRWIERNKSWLKFVDQSSILLVVYVAFSEAVVQGLWHQVPMSMLVALLVINAV 241

Query: 271 LLGTVLLVTTYGARALKMPRGDEIVLVFCGSKKSLASGIPIASVLFAGSGAAVVLLPIML 330
           LL  ++ +TTYG+R L   + DEI +VFCGSKKSLASG+P+A VLF+     +VLLP+ML
Sbjct: 242 LLALIMALTTYGSRRLGFSKEDEITIVFCGSKKSLASGVPMAKVLFSSGAIGMVLLPVML 301

Query: 331 FHQMQLMLCAVLARRYAARQESEQTGEHPQQKG 363
           FHQ+QLM+CAVLA RY ARQE  +     +  G
Sbjct: 302 FHQLQLMVCAVLAARYGARQEEVEAAVASESGG 334


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.139    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,004,566
Number of extensions: 36609
Number of successful extensions: 167
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 2
Length of query: 370
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 283
Effective length of database: 1,207,925
Effective search space: 341842775
Effective search space used: 341842775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)