BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0190.p
         (197 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309850|ref|YP_003773942.1| hypothetical protein Hsero_0515...   309   1e-85

>gi|300309850|ref|YP_003773942.1| hypothetical protein Hsero_0515
           [Herbaspirillum seropedicae SmR1]
          Length = 206

 Score =  309 bits (791), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 143/173 (82%), Positives = 162/173 (93%)

Query: 25  GCDRHIDQELAAHEAAQTTLGLTPKQFADRFNNRLADVLRDMKVEEPEHMAHLYMLDASR 84
           GCDR IDQ+LAAHEAAQTTLG+TPK+FA RFN RL DVL +M+V++PEHMAHLYMLDASR
Sbjct: 34  GCDRSIDQQLAAHEAAQTTLGVTPKEFAGRFNQRLRDVLTEMQVDDPEHMAHLYMLDASR 93

Query: 85  LHPGKYEYVLDTQVGPAQTTLIGTLNKKGELRNVGVMMTNKVPGARDEFLICASSTARSF 144
           LHPG+YEYVLDTQVGP+QTT+IGTLNK G+LRNVGVM+TNK PGAR+EFL+CA+S ARSF
Sbjct: 94  LHPGQYEYVLDTQVGPSQTTIIGTLNKSGQLRNVGVMLTNKTPGAREEFLVCAASAARSF 153

Query: 145 ISGSEDKLLPLITRLTTVALDNPGQRMTEVVADQLLSVELVPQGVLFQVQPRQ 197
           +   ++KLLPLITRLTTVALDNPGQRM+EVVADQLLSVELVPQGVLFQVQPRQ
Sbjct: 154 VDAGQEKLLPLITRLTTVALDNPGQRMSEVVADQLLSVELVPQGVLFQVQPRQ 206


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 514,259
Number of extensions: 18794
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 117
Effective length of database: 1,241,070
Effective search space: 145205190
Effective search space used: 145205190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)