BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0189.p (549 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309849|ref|YP_003773941.1| aerotaxis sensor receptor trans... 929 0.0 gi|300309789|ref|YP_003773881.1| aerotaxis sensor receptor trans... 580 e-166 gi|300312376|ref|YP_003776468.1| aerotaxis sensor receptor trans... 361 e-101 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 311 9e-86 gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sen... 291 6e-80 >gi|300309849|ref|YP_003773941.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 554 Score = 929 bits (2402), Expect = 0.0, Method: Compositional matrix adjust. Identities = 483/554 (87%), Positives = 513/554 (92%), Gaps = 5/554 (0%) Query: 1 MRTNLPITTNERLLEDGKSIVSKTDLQGNITYVNPYFVEISGFDEAELIGAPQNIVRHPE 60 MR NLPITT ERLLEDGKSIVSKTDLQGNI YVNPYF+EISGF+E ELIGAPQNIVRHPE Sbjct: 1 MRKNLPITTTERLLEDGKSIVSKTDLQGNILYVNPYFIEISGFEEEELIGAPQNIVRHPE 60 Query: 61 MPREAFADMWATLKEG-XWNGLVKNRCKNGDYYWVQANVTPVRENGRAVGYMSVRTRPSR 119 MPREAFADMWATLKEG WNGLVKNRCKNGDYYWVQANVTPVRENGRAVGYMSVRTRPSR Sbjct: 61 MPREAFADMWATLKEGLPWNGLVKNRCKNGDYYWVQANVTPVRENGRAVGYMSVRTRPSR 120 Query: 120 EQVQAADSAYRAFVGGQARGLRIRRGAVARTGFIGWLQGLRDLPLAKRLGWMMGVLTLMF 179 EQVQAA++AYR F GQARGLR+ RGAV RTG GWLQGLR+LP+A+RLGW MGVLTLMF Sbjct: 121 EQVQAAEAAYRKFSAGQARGLRVHRGAVVRTGLTGWLQGLRELPVARRLGWTMGVLTLMF 180 Query: 180 ILGGAVAGSAVQTAGGSPYAVWLGTLGGAALLLGSWAVLHASVVAPLQRAIKSVHGLAGG 239 ILGGAVAG+AV +AGGSP+AVWLGT GA +LL SWA+LHAS+VAPLQRAIK+VHGLAGG Sbjct: 181 ILGGAVAGNAVMSAGGSPFAVWLGTAAGALMLLASWAMLHASIVAPLQRAIKAVHGLAGG 240 Query: 240 DLDLHIDTDARGDMGLLLQALQQLNVNLRAIIGDVRRNVESMTISTGEIASGNMDLSSRT 299 DLD HIDT ARGDMGLLLQALQQLNVNLRAIIGDVRRNVESMTISTGEIA+GNMDLS RT Sbjct: 241 DLDSHIDTTARGDMGLLLQALQQLNVNLRAIIGDVRRNVESMTISTGEIANGNMDLSGRT 300 Query: 300 ESQASALEETASSVEQFAATVRQNADSAANADRQAQSASSIAQRGSHSVQRMGKTMEEID 359 E+QASALEETASSVE+FAATVRQNADSAANADRQAQSAS+IAQRG SVQRMG+TMEEID Sbjct: 301 EAQASALEETASSVEEFAATVRQNADSAANADRQAQSASAIAQRGGSSVQRMGRTMEEID 360 Query: 360 AASHKIVDIIGLIDGISFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAK 419 AASHKIVDIIGLIDGISFQTNILALNAAVEAARAGEQGRGFAVVA+EVRTLAQRSAAAAK Sbjct: 361 AASHKIVDIIGLIDGISFQTNILALNAAVEAARAGEQGRGFAVVAAEVRTLAQRSAAAAK 420 Query: 420 DIKGLIDDSRAKVESGNQLVRETAQAMGDLGGAVENMAVTMAEITVASNEQSGGIEQLNQ 479 DIKGLIDDSRAKVESGNQLVRETAQAMG+LGGAVENMAVTMAEITVASNEQSGGIEQLNQ Sbjct: 421 DIKGLIDDSRAKVESGNQLVRETAQAMGELGGAVENMAVTMAEITVASNEQSGGIEQLNQ 480 Query: 480 AVNAIDETTQQNAALVEQAAAAAENLRDQSIKLSQAMSVFKISYSAPR----SPASASAN 535 AVNAIDETTQQNAALVEQAAAAAENLRDQ++KLSQA+SVFKISY+ R +P ++ A Sbjct: 481 AVNAIDETTQQNAALVEQAAAAAENLRDQAVKLSQAVSVFKISYAVSRAANVAPDTSVAL 540 Query: 536 TATRQKETTLALAQ 549 Q LALA+ Sbjct: 541 PPASQGPRKLALAR 554 >gi|300309789|ref|YP_003773881.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 520 Score = 580 bits (1494), Expect = e-166, Method: Compositional matrix adjust. Identities = 302/525 (57%), Positives = 389/525 (74%), Gaps = 10/525 (1%) Query: 1 MRTNLPITTNERLLEDGKSIVSKTDLQGNITYVNPYFVEISGFDEAELIGAPQNIVRHPE 60 MR N+P+T ERLL DGK+IVSKTDL+GNITYVNPYF+EISGF+E EL+GAPQN++RHP+ Sbjct: 1 MRMNMPVTGQERLLIDGKAIVSKTDLKGNITYVNPYFIEISGFEENELLGAPQNLIRHPD 60 Query: 61 MPREAFADMWATLKEGX-WNGLVKNRCKNGDYYWVQANVTPVRENGRAVGYMSVRTRPSR 119 MP EAFADMWAT+K G W GLVKNR KNGD+YWV+ANVTP+RENG+ VGYMSVRT+P R Sbjct: 61 MPAEAFADMWATIKGGTPWTGLVKNRSKNGDHYWVRANVTPIRENGQIVGYMSVRTKPER 120 Query: 120 EQVQAADSAYRAFVGGQARGLRIRRGAVARTGFIGWLQGLRDLPLAKRLGWMMGVLTLMF 179 + V A+ Y + GQA+G+ + RG V RTG GWL L + L RL MG++ L Sbjct: 121 DAVAGAEKLYASIRRGQAKGIALHRGEVVRTGLAGWLGKLSRMQLNSRLNLSMGIM-LAI 179 Query: 180 ILGGAVAGSAVQTAGGSPYAVWLGTLGGAALL--LGSWAVLHASVVAPLQRAIKSVHGLA 237 L VAG A + + W+ L AA L + W L +++ PL +A+ H + Sbjct: 180 QLAVVVAGMA------ALHQWWISALAAAAALLSIVQWIALRNALIKPLHQALDITHAIT 233 Query: 238 GGDLDLHIDTDARGDMGLLLQALQQLNVNLRAIIGDVRRNVESMTISTGEIASGNMDLSS 297 GGDL + I+T ++G LL++L+Q+NVNL AIIGDVR NVE++T++T EIASGN+DLS Sbjct: 234 GGDLSVRIETTRHDELGRLLRSLRQMNVNLTAIIGDVRSNVETITLATREIASGNLDLSR 293 Query: 298 RTESQASALEETASSVEQFAATVRQNADSAANADRQAQSASSIAQRGSHSVQRMGKTMEE 357 RTE+QA+ LEETASS+ + A+TVRQNAD A A+ A +AS+IA RG +V G TM E Sbjct: 294 RTEAQAANLEETASSMHELASTVRQNADHAVQANDLAGTASAIAMRGGDAVASTGTTMNE 353 Query: 358 IDAASHKIVDIIGLIDGISFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAA 417 I +SHKIVDII LID I+FQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSAAA Sbjct: 354 ISESSHKIVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAA 413 Query: 418 AKDIKGLIDDSRAKVESGNQLVRETAQAMGDLGGAVENMAVTMAEITVASNEQSGGIEQL 477 AK+IK LID S KV+ GN+ V + M D+ +V+ ++ M EI A+ +QS GI Q+ Sbjct: 414 AKEIKELIDASVEKVDIGNRQVEQATSTMRDIVASVQRVSGIMGEIKEATQQQSAGINQV 473 Query: 478 NQAVNAIDETTQQNAALVEQAAAAAENLRDQSIKLSQAMSVFKIS 522 ++A+ +D +TQQNA+LVE+AAAAA +L++Q+++L QA+SVFK + Sbjct: 474 HEAITQMDASTQQNASLVEEAAAAAGSLQEQTVRLLQAISVFKFN 518 >gi|300312376|ref|YP_003776468.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 493 Score = 361 bits (926), Expect = e-101, Method: Compositional matrix adjust. Identities = 224/501 (44%), Positives = 314/501 (62%), Gaps = 11/501 (2%) Query: 21 VSKTDLQGNITYVNPYFVEISGFDEAELIGAPQNIVRHPEMPREAFADMWATLKEG-XWN 79 +S TD +TY N FVE+SGF +LIG P NIVRHP+MPREAFADMWATL+ G W Sbjct: 1 MSSTDTSSVLTYANSSFVEVSGFHREQLIGQPHNIVRHPDMPREAFADMWATLRRGDAWT 60 Query: 80 GLVKNRCKNGDYYWVQANVTPVRENGRAVGYMSVRTRPSREQVQAADSAYRAFVGGQARG 139 +VKNR +G +YWV+ANVTP+R G G++SVRT+P+ +++AA + YR F G+ARG Sbjct: 61 AVVKNRRADGRHYWVRANVTPIRRGGGITGFLSVRTQPAPHEIRAAAALYRRFREGRARG 120 Query: 140 LRIRRGAVARTGFIGWLQGLRDLPLAKRLGWMMGVLTLMFILGGAVAGSAVQTAGGSPYA 199 LR G V R+G +GW + + LP+ RL + L + GG +AG+ + S Sbjct: 121 LRFCHGLVVRSGLLGWTRLEQVLPVRWRLRLALAAGGLTALAGGILAGAPLAPMAASV-- 178 Query: 200 VWLGTLGGAALLLGSWAVLHASVVAPLQRAIKSVHGLAGGDLDLHIDTDARGDMGLLLQA 259 L L A L W L + APL+ ++ +A G D ++GLLL+A Sbjct: 179 --LPPLALACL----W--LERRLAAPLELVLQQAKAVACGQPAQTQGLDRIDEIGLLLRA 230 Query: 260 LQQLNVNLRAIIGDVRRNVESMTISTGEIASGNMDLSSRTESQASALEETASSVEQFAAT 319 + Q +NLRA+I DV V+ + ++ +IAS N DL RT + L++TAS+ EQ A Sbjct: 231 VNQSGLNLRALIDDVAAQVQGLEQASRQIASDNADLRQRTADTHAQLQQTASAAEQMATA 290 Query: 320 VRQNADSAANADRQAQSASSIAQRGSHSVQRMGKTMEEIDAASHKIVDIIGLIDGISFQT 379 VR +ADSA A QA+ S A +G V ++ +TM +I AS +I +I GLID I+FQT Sbjct: 291 VRHSADSAQAAHAQARQTSQAAAQGRDIVTQVVQTMHQIADASGRIGEINGLIDSIAFQT 350 Query: 380 NILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKDIKGLIDDSRAKVESGNQLV 439 NILALNAAVEAARAGE GRGFAVVA+EVRTLAQRSA+AA++IK LI S + ++G Q Sbjct: 351 NILALNAAVEAARAGEAGRGFAVVAAEVRTLAQRSASAAREIKALIAHSVGQSQAGAQRA 410 Query: 440 RETAQAMGDLGGAVENMAVTMAEITVASNEQSGGIEQLNQAVNAIDETTQQNAALVEQAA 499 + A A+ + ++M+ + I+ ++ EQS G+ Q++Q+ +D TQQNAA+VE +A Sbjct: 411 EQAAAAIESIVAQAQDMSTLIGAISTSAVEQSQGVSQVSQSALMLDGMTQQNAAMVEHSA 470 Query: 500 AAAENLRDQSIKLSQAMSVFK 520 AA ++ + L QA++VF+ Sbjct: 471 AAVAAMQQRMQTLQQAVAVFE 491 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 311 bits (797), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 181/324 (55%), Positives = 246/324 (75%), Gaps = 2/324 (0%) Query: 208 AALLLGSWAVLHASVVAPLQRAIKSVHGLAGGDLDLHIDTDARGDMGLLLQALQQLNVNL 267 AA++LG ++ S+V PL A++ +A GDL I+ +R + G L+QAL+++N NL Sbjct: 205 AAIILGY--LMARSIVKPLTEAVRVAENVAAGDLTTRIEPHSRDETGQLMQALRKMNDNL 262 Query: 268 RAIIGDVRRNVESMTISTGEIASGNMDLSSRTESQASALEETASSVEQFAATVRQNADSA 327 I+ VRR ES+T ++GEIASGN+DLS+RTE QA +LEETAS++E+ +TVRQNAD+A Sbjct: 263 IEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGSLEETASAMEEMTSTVRQNADNA 322 Query: 328 ANADRQAQSASSIAQRGSHSVQRMGKTMEEIDAASHKIVDIIGLIDGISFQTNILALNAA 387 A++ A SAS IA +G V R+ TM+EI+ +S KIVDIIG+IDGI+FQTNILALNAA Sbjct: 323 RQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKIVDIIGVIDGIAFQTNILALNAA 382 Query: 388 VEAARAGEQGRGFAVVASEVRTLAQRSAAAAKDIKGLIDDSRAKVESGNQLVRETAQAMG 447 VEAARAGEQGRGFAVVA+EVR+LAQRSAAAAK+IK LI DS KVE G+ LV + M Sbjct: 383 VEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIADSVGKVEGGSALVAQAGATME 442 Query: 448 DLGGAVENMAVTMAEITVASNEQSGGIEQLNQAVNAIDETTQQNAALVEQAAAAAENLRD 507 + +V ++ +AEI+ AS EQS GIE++N+AV +DE TQQNAALVEQAAAAA+++++ Sbjct: 443 QVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMDEGTQQNAALVEQAAAAAKSMQE 502 Query: 508 QSIKLSQAMSVFKISYSAPRSPAS 531 Q+++L+Q++S+FK+ A PA+ Sbjct: 503 QAVRLTQSISIFKLEQGAASIPAA 526 >gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sensory transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 291 bits (746), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 212/467 (45%), Positives = 290/467 (62%), Gaps = 44/467 (9%) Query: 79 NGLVKNRCK---NGDYYWVQANVTPVRENGRAVGYMSVRTRPSREQVQAADSAYRAFVG- 134 N L + R + + + W+++ + P E RAV R REQ+ A + +A G Sbjct: 104 NTLQQQRLQELSDSEQRWLKSAIDPAIELRRAV-------REGREQMAAVVAFEQAGKGK 156 Query: 135 GQARGLRIRRGAVARTGFIGWLQGLRDLPLAKRLGWMMGVLTLMFILGGAVAGSAVQTAG 194 Q +R+ + RT L G R A+ + V + I GGA+A Sbjct: 157 SQMDSMRVLLDDLDRTE--SALLGER----AEEAAALRSVTSTTLIGGGAIA-------- 202 Query: 195 GSPYAVWLGTLGGAALLLGSWAVLHASVVAPLQRAIKSVHGLAGGDLDLHIDTDARGDMG 254 + L A+LL W L ++ PL A++ +A GDL I+ +R + G Sbjct: 203 -----LML------AVLLAWW--LANNITRPLALAVQLARRVASGDLTARIEVRSRDETG 249 Query: 255 LLLQALQQLNVNLRAIIGDVRRNVESMTISTGEIASGNMDLSSRTESQASALEETASSVE 314 LL AL+ +N +L I+ VRR E + ++ EIA+GN+DLSSRTE QAS+LEETASS+E Sbjct: 250 ALLGALKDMNESLVRIVSGVRRGTEMIATASSEIATGNLDLSSRTEQQASSLEETASSME 309 Query: 315 QFAATVRQNADSAANADRQAQSASSIAQRGSHSVQRMGKTMEEIDAASHKIVDIIGLIDG 374 + +TV+QN +A A+R AQ+AS IA G V R+ TMEEI+ +S KIVDII +IDG Sbjct: 310 ELTSTVQQNTANAREANRMAQAASDIASSGGGVVARVVDTMEEINDSSRKIVDIISVIDG 369 Query: 375 ISFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKDIKGLIDDSRAKVES 434 I+FQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSAAAAK+IK LI DS AKVES Sbjct: 370 IAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKALISDSVAKVES 429 Query: 435 GNQLVRETAQAMGDLGGAVENMAVTMAEITVASNEQSGGIEQLNQAVNAIDETTQQNAAL 494 G+ LV E M ++ +V+ + + EI+ A EQ GIEQ++QAV +D+ TQQNAAL Sbjct: 430 GSLLVNEAGDTMREIVESVQRVTNMINEISAAGEEQRSGIEQVSQAVGQMDQVTQQNAAL 489 Query: 495 VEQAAAAAENLRDQSIKLSQAMSVFKISYS-----APR-SPASASAN 535 VEQAAAA+++L++Q+ +L+QA+SVF++ AP +PAS +A+ Sbjct: 490 VEQAAAASQSLQEQAQELAQAVSVFRLEAGQALEVAPEPAPASVAAS 536 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.128 0.352 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,326,877 Number of extensions: 49152 Number of successful extensions: 556 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 313 Number of HSP's successfully gapped: 71 Length of query: 549 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 459 Effective length of database: 1,193,720 Effective search space: 547917480 Effective search space used: 547917480 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)