BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0164.p
         (239 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309831|ref|YP_003773923.1| tRNA guanine-N(7)-methyltransfe...   476   e-136

>gi|300309831|ref|YP_003773923.1| tRNA
           guanine-N(7)-methyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 252

 Score =  476 bits (1225), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 228/239 (95%), Positives = 235/239 (98%)

Query: 1   MSENKSGKPLFYDPSERRIRSFVTRAGRVSVAQGRALEELGPRFLVPYDKAPLDLAVTFG 60
           MSENKSGKPLFYDPSERRIRSFVTRAGRVSV QGRALEELGPRFL+PYDKAPLDL   FG
Sbjct: 14  MSENKSGKPLFYDPSERRIRSFVTRAGRVSVGQGRALEELGPRFLLPYDKAPLDLEAAFG 73

Query: 61  RQAPTILEIGFGMGETSAKISALMPEKNFIGVEVHTPGVGSYLKLIGEGNLDNVRIIQHD 120
           R+APTILEIGFGMGETSAKISALMPEKNFIGVEVHTPGVGSYLKLIGEG+L+NVRIIQHD
Sbjct: 74  RKAPTILEIGFGMGETSAKISALMPEKNFIGVEVHTPGVGSYLKLIGEGHLENVRIIQHD 133

Query: 121 AVEVLTNMIAPDSLAGVHVFFPDPWHKARHNKRRLIQSPLVQLISTRLAPGGYLHCATDW 180
           AVEVLTNMIAPD+LAGVHVFFPDPWHKARHNKRRLIQSPLVQLIS+RLAPGGYLHCATDW
Sbjct: 134 AVEVLTNMIAPDTLAGVHVFFPDPWHKARHNKRRLIQSPLVQLISSRLAPGGYLHCATDW 193

Query: 181 EEYAIQMLEVLSAEPTLKNTATDPSGYVPRPEYRDTTKFENRGLRLGHGVWDLVFEKRA 239
           EEYAIQML+VLSAEPTLKNTATDPSGYVPRPEYRDTTKFENRGLRLGHGVWDLVFEKRA
Sbjct: 194 EEYAIQMLDVLSAEPTLKNTATDPSGYVPRPEYRDTTKFENRGLRLGHGVWDLVFEKRA 252


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.138    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 808,548
Number of extensions: 34684
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 157
Effective length of database: 1,231,600
Effective search space: 193361200
Effective search space used: 193361200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)