BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0163.p (522 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 367 e-102 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 353 1e-98 gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis pro... 348 8e-97 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 347 1e-96 gi|300313306|ref|YP_003777398.1| methyl-accepting chemotaxis pro... 347 1e-96 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 367 bits (942), Expect = e-102, Method: Compositional matrix adjust. Identities = 252/536 (47%), Positives = 342/536 (63%), Gaps = 40/536 (7%) Query: 3 LNDLKIGVRL--GMLSVLLLAAIAFVGIRGVMAVGEVYGQGAQGMETGALIEQSVDVARS 60 + +LKIGVRL G +++L+L A+ ++A+G V+ G+ G T + ++ R Sbjct: 1 MKNLKIGVRLAIGFIALLMLMAV-------MVALG-VWRLGSIGDATDDMTRIALKKERD 52 Query: 61 AQVQFKIQVQE--WKNTLLRGKDPAAFNKYRQAFIDESAATQKQL-KTLETLMPRIGMDA 117 A VQ+ ++E + + D AF Y Q ID +A QL K +E + DA Sbjct: 53 A-VQWHAAIKENGVRTFAVMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAIT----DA 107 Query: 118 EPARKAQQAHAELLNRYLEALKLYAADDPASVARVDEQVKG--------VDRVPTKMIDD 169 E R + E KL AA + D + G D KM+DD Sbjct: 108 EEKRL-----------FDEVGKLRAAYRATRQSIFDVKTAGDDARAREMTDTTLVKMMDD 156 Query: 170 IVVAVLEHSRKTREALNADSLF---DYQQARLLLLVSIGLSLLLGLAITWTLVRSIVRPL 226 VL ++ ++ ++ + DY+ R +LL + ++LG A+ W L RSI RPL Sbjct: 157 YADGVLRYADFQKQVIDQTAAAINRDYRSGRSMLLALGAIEIVLGAALAWLLTRSITRPL 216 Query: 227 DEAVQIAQTVAAGDLRSEVVIRGKDETAQLLHSLKEMNDNLAGIVAEVRSGTGAITVAAT 286 ++AV IA+TVAAGDL S + +DET +LL +LK MN NL IV VR GT I A+ Sbjct: 217 NQAVTIAETVAAGDLTSRIDSSSRDETGKLLAALKTMNGNLLDIVGRVRMGTETINTASR 276 Query: 287 EIASGNRDLSERTEEQAGSLEETAASMEEITSTVQKNAENTRQAHQLADEASGVARKGGD 346 EIA+GN DLS RTE QAGSLEETA++ME++TSTV++NA+N RQA++LA AS VA +GG Sbjct: 277 EIATGNLDLSARTEAQAGSLEETASAMEQLTSTVKQNADNARQANELAASASQVATQGGA 336 Query: 347 MVGAVVQTMQAIEESSHRIVEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASE 406 +V VV TM AI SS +I +II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASE Sbjct: 337 VVDQVVATMGAIHASSQKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASE 396 Query: 407 VRSLAQRSATAAREIKELIDDSVGKINAGSALVNGAGGTMEDIITAIHKVAEIMDDINVA 466 VRSLAQRSA+AA+EIK+LIDDSV K++ GS LV AG TM++++ ++ +V ++ +I +A Sbjct: 397 VRSLAQRSASAAKEIKQLIDDSVEKVDDGSRLVARAGDTMQEVVQSVARVTAVVREITLA 456 Query: 467 NREQSAEIDEVNKAVVQMDGVTQQNAALVEEAAAAAESLQFQAESLSRAVAVFKLK 522 ++EQS I++VN A+ +D TQQNAALVE+AAAAA S+Q QA SL+ AV+VF+L+ Sbjct: 457 SQEQSDGIEQVNLAITHIDETTQQNAALVEQAAAAARSMQDQAASLTDAVSVFRLE 512 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 353 bits (907), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 202/330 (61%), Positives = 262/330 (79%) Query: 193 YQQARLLLLVSIGLSLLLGLAITWTLVRSIVRPLDEAVQIAQTVAAGDLRSEVVIRGKDE 252 Y+ A L ++ + +++ L + + R++ RPL+EAV +A+ VA GDL ++ DE Sbjct: 186 YRSATLWIIGLLAAIVVIALGLAVMVARAVSRPLNEAVAVAERVAQGDLTMDIRATSTDE 245 Query: 253 TAQLLHSLKEMNDNLAGIVAEVRSGTGAITVAATEIASGNRDLSERTEEQAGSLEETAAS 312 T L+HSL+ MND+L IV EVR+GT IT A+ EIA+GN DLS RTEEQAGSLEETA++ Sbjct: 246 TGMLMHSLRAMNDSLQQIVGEVRTGTDTITTASQEIATGNLDLSSRTEEQAGSLEETASA 305 Query: 313 MEEITSTVQKNAENTRQAHQLADEASGVARKGGDMVGAVVQTMQAIEESSHRIVEIISVI 372 MEE+T+TV++NA+N RQA+QLA AS +A +GG +VG VVQTM+ I ESS+RI +IISVI Sbjct: 306 MEELTATVKQNADNARQANQLAASASDIATQGGAVVGQVVQTMEGITESSNRIADIISVI 365 Query: 373 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAREIKELIDDSVGKI 432 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AA+EIK+LIDDSV K+ Sbjct: 366 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDSVEKV 425 Query: 433 NAGSALVNGAGGTMEDIITAIHKVAEIMDDINVANREQSAEIDEVNKAVVQMDGVTQQNA 492 AGS LV AG TM +++ ++ +V +++ +I+ A+ EQS I+E+N+A+ QMD VTQQNA Sbjct: 426 GAGSQLVERAGATMSEVVASVRRVTDVVAEISAASNEQSTGIEEINRAITQMDEVTQQNA 485 Query: 493 ALVEEAAAAAESLQFQAESLSRAVAVFKLK 522 ALVEEAAAAA+SLQ QA LS+ V+VFKL+ Sbjct: 486 ALVEEAAAAAQSLQDQAARLSQVVSVFKLQ 515 >gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 571 Score = 348 bits (892), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 200/336 (59%), Positives = 260/336 (77%) Query: 186 NADSLFDYQQARLLLLVSIGLSLLLGLAITWTLVRSIVRPLDEAVQIAQTVAAGDLRSEV 245 +AD+ Y QA + +L + ++L +A++W + R + RPL AV IA+ VAAGDL +++ Sbjct: 179 DADADHIYGQANMAILALVTTCVVLAMALSWWIARLVARPLANAVDIARQVAAGDLTADI 238 Query: 246 VIRGKDETAQLLHSLKEMNDNLAGIVAEVRSGTGAITVAATEIASGNRDLSERTEEQAGS 305 +DET QLL +L++MN NL IV EVR GT IT A+ EIA+GN DLS RTE+QAG+ Sbjct: 239 PTAHRDETGQLLEALRQMNGNLLNIVREVRQGTDTITTASAEIATGNMDLSSRTEQQAGA 298 Query: 306 LEETAASMEEITSTVQKNAENTRQAHQLADEASGVARKGGDMVGAVVQTMQAIEESSHRI 365 LEETA++MEE+TSTV++N++N RQA+QLA AS VA+ GG +VG VV TM AI +SS +I Sbjct: 299 LEETASAMEELTSTVRQNSDNARQANQLAVNASEVAQAGGTVVGKVVATMSAINDSSRKI 358 Query: 366 VEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAREIKELI 425 V+II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AA EIK LI Sbjct: 359 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAHEIKALI 418 Query: 426 DDSVGKINAGSALVNGAGGTMEDIITAIHKVAEIMDDINVANREQSAEIDEVNKAVVQMD 485 DDSV K++ GS LV+ AG TM +++ ++ +V++I+ +I A EQ+ I+++N AVVQMD Sbjct: 419 DDSVAKVDTGSKLVDEAGQTMNEVVASVKRVSDIVAEITAAGAEQTQGIEQINNAVVQMD 478 Query: 486 GVTQQNAALVEEAAAAAESLQFQAESLSRAVAVFKL 521 TQQNAALVE+AAAAA++LQ QA LS V+VF+L Sbjct: 479 ENTQQNAALVEQAAAAAKALQEQAGRLSETVSVFRL 514 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 347 bits (891), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 209/334 (62%), Positives = 262/334 (78%), Gaps = 8/334 (2%) Query: 193 YQQARLLLLVS----IGLSLLLGLAITWTLVRSIVRPLDEAVQIAQTVAAGDLRSEVVIR 248 Y QARL ++V+ IGL++LL + ++ R I RPL+EAV +AQ VA GDL + + Sbjct: 186 YAQARLWIIVTVAACIGLAMLLAVWVS----RLIARPLEEAVSVAQRVAGGDLTTRIEPA 241 Query: 249 GKDETAQLLHSLKEMNDNLAGIVAEVRSGTGAITVAATEIASGNRDLSERTEEQAGSLEE 308 GKDET QLL +LK MND+L GIV +VR GT IT A+TEIASGN DLS RTEEQA SLEE Sbjct: 242 GKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLSSRTEEQASSLEE 301 Query: 309 TAASMEEITSTVQKNAENTRQAHQLADEASGVARKGGDMVGAVVQTMQAIEESSHRIVEI 368 TA++MEE+TSTV++NA+N RQA+QLA AS VA +GG +V VV TM +I SS +I +I Sbjct: 302 TASAMEELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGSINASSRKIADI 361 Query: 369 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAREIKELIDDS 428 I VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AA+EIKELI+ S Sbjct: 362 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIEGS 421 Query: 429 VGKINAGSALVNGAGGTMEDIITAIHKVAEIMDDINVANREQSAEIDEVNKAVVQMDGVT 488 V +++ GS LV AG TM +++ ++ +V +I+ +I+ A++EQS I++VN A+ QMD VT Sbjct: 422 VAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSASQEQSEGIEQVNLAIAQMDEVT 481 Query: 489 QQNAALVEEAAAAAESLQFQAESLSRAVAVFKLK 522 QQNAALVEEAAAAA+SLQ QAE+L++ V FKL+ Sbjct: 482 QQNAALVEEAAAAAQSLQEQAETLTQTVGFFKLE 515 >gi|300313306|ref|YP_003777398.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 507 Score = 347 bits (890), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 241/521 (46%), Positives = 330/521 (63%), Gaps = 25/521 (4%) Query: 6 LKIGVRLG---MLSVLLLAAIAFVGIRGVMAVGEVYGQGAQGMETGALIEQSVDVARSAQ 62 +KIG RLG ML LL A+ + +G + +G ++ + D A Sbjct: 1 MKIGTRLGGSFMLVTLLTCALIVASTLTLTQIGRHWND-----FSGTVLGKQ-DYATQGY 54 Query: 63 VQFKIQVQEWKNTLLRGKDPAAFNKYRQAFIDESAATQKQLKTLETLMPRIGMDAEPARK 122 ++ VQ +KN ++RGKD ++++ A +D +Q + L P+ E A Sbjct: 55 IKLGDGVQNFKNYVVRGKD---YDRHFLADMDAIVRLMEQYRKLGVDNPK-----EEALL 106 Query: 123 AQQAHAELLNRYLEALKLYAADDPA--SVARVDEQVKGVDRVPTKMIDDIVVAVLEHSRK 180 + ++ E RY EAL A A S + VD + G D+V ++ E++ Sbjct: 107 EKISNGE--RRYREALAKAQAMKAAGASPSEVDAAISGADKVLGAGFSGLLAIARENAGS 164 Query: 181 TREALNADSLFDYQQARLLLLVSIGLSLLLGLAITWTLVRSIVRPLDEAVQIAQTVAAGD 240 T E +++ + L L L ++L L + RSI +P+ EAV+IA+TVAAGD Sbjct: 165 TGEQISSA----IGAGKSLSLAVGALVVILALVLAVLATRSITQPMREAVRIAKTVAAGD 220 Query: 241 LRSEVVIRGKDETAQLLHSLKEMNDNLAGIVAEVRSGTGAITVAATEIASGNRDLSERTE 300 L S +V+ KDET +LL +LKEMN +L +V VR G+ I A+T+IA GN DLS RTE Sbjct: 221 LGSRIVVTRKDETGELLQALKEMNASLQKVVGGVREGSDTIVTASTQIAGGNLDLSARTE 280 Query: 301 EQAGSLEETAASMEEITSTVQKNAENTRQAHQLADEASGVARKGGDMVGAVVQTMQAIEE 360 EQA SLE+TAA+MEEITSTV++NA++ RQA+ +A S VA + G +V VV TM I+ Sbjct: 281 EQASSLEQTAAAMEEITSTVRRNADHARQANAMAGSVSEVASRSGLVVSDVVGTMDEIQA 340 Query: 361 SSHRIVEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAARE 420 S+ I EIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSATAA+E Sbjct: 341 SAREIEEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSATAAKE 400 Query: 421 IKELIDDSVGKINAGSALVNGAGGTMEDIITAIHKVAEIMDDINVANREQSAEIDEVNKA 480 IK+LI +SV KI AGS LV AG T+E+++ ++ V +IM +I+ A+ EQ + I++VN+A Sbjct: 401 IKDLIGNSVEKIAAGSKLVQAAGATIEELVRSVRDVTQIMSEISAASGEQESGIEQVNQA 460 Query: 481 VVQMDGVTQQNAALVEEAAAAAESLQFQAESLSRAVAVFKL 521 + QMD VTQQNAALVEEAAAA E+L+ QA L+ +V+VF+L Sbjct: 461 IAQMDTVTQQNAALVEEAAAATEALKAQARRLAESVSVFRL 501 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.128 0.332 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,227,013 Number of extensions: 45213 Number of successful extensions: 595 Number of sequences better than 1.0e-08: 69 Number of HSP's gapped: 334 Number of HSP's successfully gapped: 71 Length of query: 522 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 432 Effective length of database: 1,193,720 Effective search space: 515687040 Effective search space used: 515687040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 133 (55.8 bits)