BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0160.p
         (290 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309829|ref|YP_003773921.1| bacitracin resistance undecapre...   527   e-151
gi|300309828|ref|YP_003773920.1| bacitracin resistance undecapre...    97   1e-21

>gi|300309829|ref|YP_003773921.1| bacitracin resistance undecaprenol
           kinase 2 [Herbaspirillum seropedicae SmR1]
          Length = 290

 Score =  527 bits (1357), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 276/290 (95%), Positives = 284/290 (97%)

Query: 1   MANVCSAGLDIGFASLSYAQIGFLGIVQGITELLPISSTAHMRVVPAFLGWHDPGSAFSA 60
           MANVCSAGLDIGFASLSYAQIG LGIVQGITELLPISSTAHMR+VPA LGWHDPGSAFSA
Sbjct: 1   MANVCSAGLDIGFASLSYAQIGLLGIVQGITELLPISSTAHMRIVPALLGWHDPGSAFSA 60

Query: 61  AMQLAALAAVISYFRRDVSAVTGGSLAAWRRRDFNDPMFKLAVAIILATIPIGIAGLALS 120
           AMQLAALAAVISYFRRDVSAVTGGSLAAWRRRDFNDPMF+LAVAIILATIPIGIAGL+LS
Sbjct: 61  AMQLAALAAVISYFRRDVSAVTGGSLAAWRRRDFNDPMFRLAVAIILATIPIGIAGLSLS 120

Query: 121 HVLNACGSPLRSLTVIGWSCIVMAVLLAISEMVCRHRRSVDQMRLRDALIVGLAQVGALI 180
           HVLNACGSPLRSLTVIGWSC+ MA+LLAISEMVCRHRRSVDQMRLRDALIVGLAQVGALI
Sbjct: 121 HVLNACGSPLRSLTVIGWSCVGMAILLAISEMVCRHRRSVDQMRLRDALIVGLAQVGALI 180

Query: 181 PGVSRSGSTLTAALFLNFRREEAARFSFLLGLPAIALAGLKELAVLLHAHIPLEAWGVLL 240
           PGVSRSGSTLTAALFLNFRREEAARFSFLLGLPAIALAGLKELAVLLHAHIPLEAWGVLL
Sbjct: 181 PGVSRSGSTLTAALFLNFRREEAARFSFLLGLPAIALAGLKELAVLLHAHIPLEAWGVLL 240

Query: 241 FGLAVASVSAFAAIWGLMKFLERFSTWPFIVYRAALGVFLLLAVSRGWLQ 290
           FGL VASVSAFAAIWGLMKFLERFSTWPFIVYRA LG FLL+AV++GWLQ
Sbjct: 241 FGLLVASVSAFAAIWGLMKFLERFSTWPFIVYRAVLGAFLLVAVAQGWLQ 290


>gi|300309828|ref|YP_003773920.1| bacitracin resistance undecaprenol
           kinase 2 [Herbaspirillum seropedicae SmR1]
          Length = 284

 Score = 97.4 bits (241), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 132/288 (45%), Gaps = 36/288 (12%)

Query: 24  LGIVQGITELLPISSTAHMRVVPAFLGWHDP------GSAFSAAMQLAALAAVISYFRRD 77
           +GIV+G+TE LPISST H+ +  + L +  P         F   +Q  A+ AV   +R  
Sbjct: 12  MGIVEGLTEFLPISSTGHLILANSLLQFTGPDLSKEKADVFEIVIQAGAILAVCWEYRVR 71

Query: 78  VSAVTGGSLAAWRRRDFNDPMFKLAVAIILATIPIGIAGLALSHVLNACGSPLRSLTVIG 137
           ++ V  G     + +       +L V +I+A +P  I G   S  +      L +   + 
Sbjct: 72  IATVLTGMFTDRKAQ-------RLVVNLIIAFLPAAILGFLFSRRIKEV---LFNPVSVA 121

Query: 138 WSCIVMAVLLAISEMVCRHRRS--------VDQMRLRDALIVGLAQVGALIPGVSRSGST 189
            + IV  +++   E   + R S        VD M   DAL VG+AQ  ALIPG SRSG+T
Sbjct: 122 IAFIVGGLIILWVERRNKDRMSMASARVETVDDMTPLDALKVGIAQAFALIPGTSRSGAT 181

Query: 190 LTAALFLNFRREEAARFSFLLGLPAIALAGL----KELAVLLHAHIPLEAWGVLLFGLAV 245
           +   +     R+ A  FSF L +P +  A +    KE A+L  A +PL        G   
Sbjct: 182 IIGGMMFGLSRKAATEFSFFLAIPTLFAATIYSLYKERALLSAADVPL-----FTVGTVA 236

Query: 246 ASVSAFAAIWGLMKFLERFSTWPFIVYRAALGVFLLLAVSRG---WLQ 290
           A VSAF  +  L++++       F  YR   G+ +L+    G   W++
Sbjct: 237 AFVSAFLCVRWLLRYISSHDFTIFAWYRIIFGIIVLVTAYTGVVAWVE 284


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.140    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 824,876
Number of extensions: 30600
Number of successful extensions: 180
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 2
Length of query: 290
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 206
Effective length of database: 1,222,130
Effective search space: 251758780
Effective search space used: 251758780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)