BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0148.p (817 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309819|ref|YP_003773911.1| acriflavin resistance transmemb... 1556 0.0 gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump pr... 925 0.0 gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump pr... 897 0.0 gi|300313244|ref|YP_003777336.1| multidrug efflux system transme... 891 0.0 gi|300309657|ref|YP_003773749.1| cation/multidrug efflux pump pr... 540 e-154 >gi|300309819|ref|YP_003773911.1| acriflavin resistance transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1048 Score = 1556 bits (4028), Expect = 0.0, Method: Compositional matrix adjust. Identities = 766/798 (95%), Positives = 785/798 (98%) Query: 1 MRIWIDPNKLIGLSLTPADVTAAIQTQNALVAGGTLGALPSPGSQQIAATVVVNGQLTSP 60 MRIWIDPNKLIGL+LTPADVTAAIQ QNALVAGGTLGALPSPG+QQIAATVVVNGQLTSP Sbjct: 184 MRIWIDPNKLIGLNLTPADVTAAIQAQNALVAGGTLGALPSPGTQQIAATVVVNGQLTSP 243 Query: 61 EQFGNIVLRANTNGSSVRLRDVARIEVGGQSYDTSGRLDGKPSSFIGVQLSPTANALGTA 120 EQFGNI+LRAN NG++VRLRDVAR+EVGGQSYDTSGRLDGKPSSFIGVQLSPTANALGTA Sbjct: 244 EQFGNIILRANANGATVRLRDVARVEVGGQSYDTSGRLDGKPSSFIGVQLSPTANALGTA 303 Query: 121 TAVHKKMEELAKYFPAGVKYTIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLFLQNIR 180 TAVHKKMEELAKYFP GVKYTIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLFLQNIR Sbjct: 304 TAVHKKMEELAKYFPTGVKYTIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLFLQNIR 363 Query: 181 YTIIPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDAIVVVENVERIMSEE 240 YTIIPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDAIVVVENVERIMSEE Sbjct: 364 YTIIPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDAIVVVENVERIMSEE 423 Query: 241 GLSPADATRKAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQFSLSMVASMVFSVL 300 GLSPADATRKAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQFSLSMVASMVFSVL Sbjct: 424 GLSPADATRKAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQFSLSMVASMVFSVL 483 Query: 301 MAFTLTPALCATILKPVEKGHHHEKKGFFGWFNRKFNTTANAYQGVIGKMLSKAGRYMIV 360 MAFTLTPALCATILKPVEKGHHHEKKGFFGWFNRKFN+TA+ YQG+IG ML+KAGRYMIV Sbjct: 484 MAFTLTPALCATILKPVEKGHHHEKKGFFGWFNRKFNSTASGYQGIIGGMLNKAGRYMIV 543 Query: 361 YVVIVACVGLLYVRLPASFLPNEDQGYIITNVQLPPGASTARTTEVVKKIEEYYLKDPAV 420 YV+IVACVGLLYVRLPASFLPNEDQGYIITNVQLPPGAST+RTT VVK+IEEYYLKDPAV Sbjct: 544 YVLIVACVGLLYVRLPASFLPNEDQGYIITNVQLPPGASTSRTTAVVKQIEEYYLKDPAV 603 Query: 421 EHAIAVLGFSFSGNGQNAALVFTPLKDWAERDKSQSADAIAGKAFGAFSQIKDAIVFPLN 480 EHAIAVLG+SFSGNGQNAALVFTPLKDW++RDKSQSADAIAGKAFGAFSQIKDAIVFPLN Sbjct: 604 EHAIAVLGYSFSGNGQNAALVFTPLKDWSQRDKSQSADAIAGKAFGAFSQIKDAIVFPLN 663 Query: 481 PPPIPELGNATGFTFRLQDRAGLGHDALVQARNQILGMASQSKVLAGVRPEGLEDAPQLQ 540 PPPIPELGNATGFTFRLQDRAGLGH ALVQARNQILGMASQSKVLAGVRPEGLEDAPQLQ Sbjct: 664 PPPIPELGNATGFTFRLQDRAGLGHTALVQARNQILGMASQSKVLAGVRPEGLEDAPQLQ 723 Query: 541 LDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPNQGRQQRVIVQADANRRLQPEDLTS 600 LDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPN GRQQRVIVQADA RRLQPEDLT+ Sbjct: 724 LDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPNLGRQQRVIVQADAKRRLQPEDLTN 783 Query: 601 LYARNSNGGMVPFSAFVTAKWINGPVQLIRYNGYPAMKIAGGAAPGRSTGEAMAEMESYV 660 LYARNS+G MVPFSAFVTAKWINGPVQLIRYNGYPAMKIAGGAAPGRSTGEAMAEMES+V Sbjct: 784 LYARNSSGTMVPFSAFVTAKWINGPVQLIRYNGYPAMKIAGGAAPGRSTGEAMAEMESFV 843 Query: 661 AKLPPGFGFEWTGQSLEEKTSGNQAPALYALSLIAVFLVLAALYESTSIPLAVMLVVPLG 720 AKLPPGFGFEWTGQSLEEKTSGNQAPALYALSLIAVFLVLAALYESTSIPLAVMLVVPLG Sbjct: 844 AKLPPGFGFEWTGQSLEEKTSGNQAPALYALSLIAVFLVLAALYESTSIPLAVMLVVPLG 903 Query: 721 ILGALLGVTLRAMPNDVYFKVGMIAVVGLSAKNAILIIEFAKDLQAQGKGLIEATLEAVH 780 ILGALLGVTLRAMPNDVYFKVGMIAVVGLSAKNAILIIEFAKDLQAQGKGLIEATLEAVH Sbjct: 904 ILGALLGVTLRAMPNDVYFKVGMIAVVGLSAKNAILIIEFAKDLQAQGKGLIEATLEAVH 963 Query: 781 LRFRPIIMTSLAFILACC 798 LRFRPIIMTSLAFIL Sbjct: 964 LRFRPIIMTSLAFILGVL 981 >gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1049 Score = 925 bits (2390), Expect = 0.0, Method: Compositional matrix adjust. Identities = 464/802 (57%), Positives = 585/802 (72%), Gaps = 4/802 (0%) Query: 1 MRIWIDPNKLIGLSLTPADVTAAIQTQNALVAGGTLGALPSPGSQQIAATVVVNGQLTSP 60 MRIW+DPNKL LTP DV AIQ QNA V+ G LG LP+ +QQI AT+ +L + Sbjct: 184 MRIWLDPNKLNSYGLTPLDVKNAIQAQNAQVSSGQLGGLPAAENQQINATITAQTRLRTA 243 Query: 61 EQFGNIVLRANTNGSSVRLRDVARIEVGGQSYDTSGRLDGKPSSFIGVQLSPTANALGTA 120 +QF NIVLR T G+ V+LRDVARIE+G +SY + GR +GKP++ + ++L+ ANAL T Sbjct: 244 DQFQNIVLRTLTGGAQVKLRDVARIELGSESYTSVGRYNGKPAAGLAIKLATGANALDTV 303 Query: 121 TAVHKKMEELAKYFPAGVKYTIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLFLQNIR 180 A+ K++ EL K+FP G+K PYDT+ FV+ISIEEVV+TLIEA+VLVFLVM+LFLQN R Sbjct: 304 KAIDKRVAELEKFFPTGMKVQKPYDTTPFVRISIEEVVRTLIEAVVLVFLVMYLFLQNFR 363 Query: 181 YTIIPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDAIVVVENVERIMSEE 240 T+IPTI VPV LLGTF L +FGF+IN LTMF MVLAIG+LVDDAIVVVENVER+MSEE Sbjct: 364 ATLIPTIAVPVVLLGTFGVLAVFGFTINTLTMFAMVLAIGLLVDDAIVVVENVERVMSEE 423 Query: 241 GLSPADATRKAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQFSLSMVASMVFSVL 300 GL P ATRK+MGQISGAL+G+ LVL AVF+PMAFF G+ G IYRQFS+++V++M SVL Sbjct: 424 GLPPKQATRKSMGQISGALVGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSAMTLSVL 483 Query: 301 MAFTLTPALCATILKPVEKGHHHEKKGFFGWFNRKFNTTANAYQGVIGKMLSKAGRYMIV 360 +A LTPALCAT+LKP KGH GFFGWFNR+F+ + YQG++ ML + RYM Sbjct: 484 VALVLTPALCATLLKPAAKGHALATTGFFGWFNRQFDRSNIRYQGIVRHMLGRGWRYMAA 543 Query: 361 YVVIVACVGLLYVRLPASFLPNEDQGYIITNVQLPPGASTARTTEVVKKIEEYYLKD--P 418 Y V++A V +++LP FLP+EDQG + +QLP GA+ ART EV++++E+++L D Sbjct: 544 YAVLLALVVAGFMKLPVGFLPDEDQGTLFAIMQLPSGATKARTDEVIRQVEQHFLVDQKE 603 Query: 419 AVEHAIAVLGFSFSGNGQNAALVFTPLKDWAERDK-SQSADAIAGKAFGAFSQIKDAIVF 477 AV AV GFSF+G+GQN F LK W ER S +A KA AF+ I+DA VF Sbjct: 604 AVSGVFAVSGFSFAGSGQNMGFAFIKLKPWDERKGPGLSVTDVAAKAGAAFANIRDARVF 663 Query: 478 PLNPPPIPELGNATGFTFRLQDRAGLGHDALVQARNQILGMASQSKVLAGVRPEGLEDAP 537 PP + ELGNATGF L+D A LGH AL+QARNQ+LG Q K L VRP GLED P Sbjct: 664 AFAPPAVSELGNATGFDLMLKDEANLGHAALMQARNQLLGELMQDKRLVAVRPNGLEDTP 723 Query: 538 QLQLDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPNQGRQQRVIVQADANRRLQPED 597 + +L +D DKA ALGV S IN ++TA GSSYVNDF ++GR ++V++Q DA R+ P D Sbjct: 724 EFRLSVDTDKAGALGVAMSDINDTIATAWGSSYVNDFIDKGRVKKVMLQGDAQYRMLPSD 783 Query: 598 LTSLYARNSNGGMVPFSAFVTAKWINGPVQLIRYNGYPAMKIAGGAAPG-RSTGEAMAEM 656 + Y RNS G MVPFSAF TA W +G +L RYNG P+M+I G A PG S+GEAMA + Sbjct: 784 VDRWYVRNSAGTMVPFSAFSTASWTSGSPRLERYNGVPSMEILGMALPGAASSGEAMAIV 843 Query: 657 ESYVAKLPPGFGFEWTGQSLEEKTSGNQAPALYALSLIAVFLVLAALYESTSIPLAVMLV 716 E+ +AK+PPG G+EWTG SL+EK S + LY +S++ VFL LAALYES ++P +V+LV Sbjct: 844 EAALAKMPPGIGYEWTGLSLQEKASSGKTGILYGVSILIVFLALAALYESWAVPFSVILV 903 Query: 717 VPLGILGALLGVTLRAMPNDVYFKVGMIAVVGLSAKNAILIIEFAKDLQAQGKGLIEATL 776 VPLG+ GALLG L NDVYF+VG++ +GL+ KNAILI+EFAKDL GK L+EAT+ Sbjct: 904 VPLGVFGALLGAMLTWKMNDVYFQVGLLTTIGLACKNAILIVEFAKDLYEHGKSLVEATM 963 Query: 777 EAVHLRFRPIIMTSLAFILACC 798 EAV +R RPI+MTSLAFIL Sbjct: 964 EAVRMRLRPILMTSLAFILGVL 985 >gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1051 Score = 897 bits (2318), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/802 (54%), Positives = 584/802 (72%), Gaps = 5/802 (0%) Query: 1 MRIWIDPNKLIGLSLTPADVTAAIQTQNALVAGGTLGALPSPGSQQIAATVVVNGQLTSP 60 MRIWIDP KL +L P+D+T+A+Q QN V+ G +GALP+ QQI AT+ +LT+P Sbjct: 184 MRIWIDPAKLQKYALMPSDITSALQAQNTEVSAGEIGALPAQPGQQINATITARSKLTTP 243 Query: 61 EQFGNIVLRANTNGSSVRLRDVARIEVGGQSYDTSGRLDGKPSSFIGVQLSPTANALGTA 120 ++F NI+++++ +GS V+L DVAR+E+GG+SY + + +GKPSS + +QL+ ANAL TA Sbjct: 244 DEFRNIIVKSSVDGSVVKLSDVARVELGGESYQVASQQNGKPSSALAIQLATGANALATA 303 Query: 121 TAVHKKMEELAKYFPAGVKY--TIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLFLQN 178 AV KK+ EL YFPA +K I YDT+ FV++S+EEVVKTLIEAIVLV L+M+LFLQN Sbjct: 304 DAVKKKLAELEPYFPASMKLKTNIAYDTTPFVRVSLEEVVKTLIEAIVLVVLIMYLFLQN 363 Query: 179 IRYTIIPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDAIVVVENVERIMS 238 IR T IP I VPV LLGTF L +FG+SIN LTMFGMVLAIG+LVDDAIVVVENVER+MS Sbjct: 364 IRATFIPAITVPVVLLGTFGILAMFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERLMS 423 Query: 239 EEGLSPADATRKAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQFSLSMVASMVFS 298 EE LSP +ATRK+M +I+GAL+GI +VL AVFIPMAFFGG+ G IYRQFS+++V++M S Sbjct: 424 EEKLSPKEATRKSMQEITGALVGIAMVLSAVFIPMAFFGGSTGVIYRQFSITIVSAMALS 483 Query: 299 VLMAFTLTPALCATILKPVEKGHHHEKKGFFGWFNRKFNTTANAYQGVIGKMLSKAGRYM 358 V++A TLTPALCAT+LKP GH + + FF WFNR F+ +A YQG + +L + R + Sbjct: 484 VMVALTLTPALCATLLKPHAGGHVQQGR-FFTWFNRSFDRSATRYQGGVAGLLKRGKRGL 542 Query: 359 IVYVVIVACVGLLYVRLPASFLPNEDQGYIITNVQLPPGASTARTTEVVKKIEEYYLKDP 418 ++Y +I + +L++RLP SFLP EDQG ++ +QLP GA+ +T VVK ++EY++ P Sbjct: 543 LMYALIAVAMAVLFMRLPTSFLPEEDQGVLMAQIQLPTGATAEQTATVVKTVQEYFMNKP 602 Query: 419 -AVEHAIAVLGFSFSGNGQNAALVFTPLKDWAERDKS-QSADAIAGKAFGAFSQIKDAIV 476 +VE +A++G GN QN A F LKDW +R + QSA + +A S+I+ A V Sbjct: 603 ESVESVLAIVGAGVGGNSQNGARAFIRLKDWEQRTGAGQSASELVRRANADLSKIRGARV 662 Query: 477 FPLNPPPIPELGNATGFTFRLQDRAGLGHDALVQARNQILGMASQSKVLAGVRPEGLEDA 536 F +NPP + LG ++GF L+D G+GHDAL+QAR+Q L +A + +LA VR GL+D Sbjct: 663 FLMNPPAVRGLGQSSGFDLELKDVGGVGHDALLQARDQFLQLARSNALLANVRTTGLDDT 722 Query: 537 PQLQLDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPNQGRQQRVIVQADANRRLQPE 596 PQL++ ID KA+AL + S IN+ L+TA+G +YVNDF + GR ++V VQ D+ R+Q + Sbjct: 723 PQLRVAIDDRKADALSIATSDINATLATAMGGTYVNDFLSNGRVKKVYVQGDSAFRMQAD 782 Query: 597 DLTSLYARNSNGGMVPFSAFVTAKWINGPVQLIRYNGYPAMKIAGGAAPGRSTGEAMAEM 656 DL Y RN+ MVPF+AF++++W GP L RYNG + +I G A G S+G AMAE+ Sbjct: 783 DLNRWYVRNAASQMVPFAAFMSSQWTYGPSLLERYNGVSSFEIVGEPAAGVSSGTAMAEV 842 Query: 657 ESYVAKLPPGFGFEWTGQSLEEKTSGNQAPALYALSLIAVFLVLAALYESTSIPLAVMLV 716 E VA+LP G GFEWTG S +E+ SGNQAP LYA+S++ VFL LAALYES S+P AV+L Sbjct: 843 EKLVAQLPAGIGFEWTGSSYQERLSGNQAPMLYAISILFVFLCLAALYESWSVPFAVILA 902 Query: 717 VPLGILGALLGVTLRAMPNDVYFKVGMIAVVGLSAKNAILIIEFAKDLQAQGKGLIEATL 776 VPLGI+G +L + M NDVYF+VG++ VGLSAKNAILI+EFAK L GK L EATL Sbjct: 903 VPLGIIGTVLLTGIFGMSNDVYFQVGLLTTVGLSAKNAILIVEFAKQLHESGKSLWEATL 962 Query: 777 EAVHLRFRPIIMTSLAFILACC 798 EAV LR RPI+MTSLAF+ Sbjct: 963 EAVQLRLRPILMTSLAFMFGVL 984 >gi|300313244|ref|YP_003777336.1| multidrug efflux system transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1033 Score = 891 bits (2302), Expect = 0.0, Method: Compositional matrix adjust. Identities = 461/801 (57%), Positives = 580/801 (72%), Gaps = 8/801 (0%) Query: 1 MRIWIDPNKLIGLSLTPADVTAAIQTQNALVAGGTLGALPSPGSQQIAATVVVNGQLTSP 60 MRIW+DP KL LT D++ AI QNA +A G LG P+ QQIA + V GQL SP Sbjct: 184 MRIWLDPFKLNAYGLTVTDISTAISQQNAQIAPGRLGDAPAVRGQQIAMPLTVQGQLQSP 243 Query: 61 EQFGNIVLRANTNGSSVRLRDVARIEVGGQSYDTSGRLDGKPSSFIGVQLSPTANALGTA 120 QF IVL+A +GS V L DVAR+E+G QSY + R +GKP+ VQLSP ANA+ TA Sbjct: 244 AQFAAIVLKAKADGSRVLLGDVARVELGAQSYAFANRENGKPAGVAAVQLSPGANAVRTA 303 Query: 121 TAVHKKMEELAKYFPAGVKYTIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLFLQNIR 180 A+ +MEEL P G+ +++PY+T+ FVKISI++VV+TLIEA+VLVFLVM+LFLQN+R Sbjct: 304 AAIQARMEELRPSLPQGMAFSLPYNTAPFVKISIQKVVQTLIEAMVLVFLVMYLFLQNVR 363 Query: 181 YTIIPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDAIVVVENVERIMSEE 240 YT+IP IV P+ALLGT A + L G+S+NVLTMFGMVLAIGI+VDDAIVVVENVERIM+ E Sbjct: 364 YTVIPAIVAPIALLGTLAVMQLAGYSVNVLTMFGMVLAIGIIVDDAIVVVENVERIMAHE 423 Query: 241 GLSPADATRKAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQFSLSMVASMVFSVL 300 GL P +AT KAMG+I+GA+IGITLVL AVFIPMA GG+VG IYRQFS++M S++FS Sbjct: 424 GLGPREATIKAMGEITGAIIGITLVLTAVFIPMALAGGSVGVIYRQFSVAMAVSILFSAF 483 Query: 301 MAFTLTPALCATILKPVEKGHHHEKKGFFGWFNRKFNTTANAYQGVIGKMLSKAGRYMIV 360 +A +LTPALCAT+L+PV G HH+K+GFFG FNR FN Y+ +G+++++ R M+V Sbjct: 484 LALSLTPALCATLLRPVPAG-HHDKRGFFGAFNRAFNRLTARYESALGRLIARGLRMMLV 542 Query: 361 YVVIVACVGLLYV---RLPASFLPNEDQGYIITNVQLPPGASTARTTEVVKKIEEYYLKD 417 Y A GLL V LP++FLP EDQGY +T+ QLP A+T RT V + E Y Sbjct: 543 Y---AALSGLLVVGMQALPSAFLPEEDQGYFMTSFQLPADATTERTARAVDQFERYLKGR 599 Query: 418 PAVEHAIAVLGFSFSGNGQNAALVFTPLKDWAERDKSQSADAIAGKAFGAFSQIKDAIVF 477 + ++VLGF FSG+G NAA+ FT LKDW ER S SA S + D +V Sbjct: 600 EDIGANLSVLGFGFSGSGPNAAMAFTELKDWKERKGSTSAAEAMAAQAAMESGV-DGMVM 658 Query: 478 PLNPPPIPELGNATGFTFRLQDRAGLGHDALVQARNQILGMASQSKVLAGVRPEGLEDAP 537 L PP I ELGN++GF RLQDRA G+ AL A Q+L +A++S+ L+GV +GL Sbjct: 659 SLLPPAIEELGNSSGFAMRLQDRANQGYAALKAAEAQLLALAAKSRKLSGVYSDGLPAGA 718 Query: 538 QLQLDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPNQGRQQRVIVQADANRRLQPED 597 +QL+IDR KA ALGV FS+I+ LS A+GS YVNDFPN GR Q+VI+QA A+ R+Q ED Sbjct: 719 SVQLEIDRHKAAALGVSFSSISDTLSAAMGSFYVNDFPNAGRMQQVILQAQASARMQLED 778 Query: 598 LTSLYARNSNGGMVPFSAFVTAKWINGPVQLIRYNGYPAMKIAGGAAPGRSTGEAMAEME 657 + LY RN +GGMVP + V A W P QL RY G+PA++I+G AAPG ++GEAMAEME Sbjct: 779 VMKLYVRNQSGGMVPLAELVKASWREAPTQLQRYQGFPAVRISGSAAPGVASGEAMAEME 838 Query: 658 SYVAKLPPGFGFEWTGQSLEEKTSGNQAPALYALSLIAVFLVLAALYESTSIPLAVMLVV 717 +LPPGF WTGQSL+E+ S QAP L ALS++ VFLVLAALYES SIPL+VMLVV Sbjct: 839 RLAQQLPPGFAVAWTGQSLQERLSAAQAPMLMALSMLVVFLVLAALYESWSIPLSVMLVV 898 Query: 718 PLGILGALLGVTLRAMPNDVYFKVGMIAVVGLSAKNAILIIEFAKDLQAQGKGLIEATLE 777 PLG++GA+ V LR MPNDV+FKVGMI V+GLSAKNAILI+EFA+ L+++G GL+EA ++ Sbjct: 899 PLGLVGAVAAVILRDMPNDVFFKVGMITVIGLSAKNAILIVEFARQLRSEGMGLVEAAIK 958 Query: 778 AVHLRFRPIIMTSLAFILACC 798 A LR RPI+MTSLAF L Sbjct: 959 ASVLRLRPILMTSLAFALGVV 979 >gi|300309657|ref|YP_003773749.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1071 Score = 540 bits (1391), Expect = e-154, Method: Compositional matrix adjust. Identities = 345/819 (42%), Positives = 498/819 (60%), Gaps = 32/819 (3%) Query: 1 MRIWIDPNKLIGLSLTPADVTAAIQTQNALVAGGTLGALPSPGSQQIAATVVVNGQLTSP 60 MR+W+DPNK+ LT DV AI+ QN VA G +GA PS + +V G+L + Sbjct: 187 MRVWLDPNKVAQRGLTATDVVRAIREQNVQVAAGVIGASPSSPETPLQLSVNAQGRLKTE 246 Query: 61 EQFGNIVLRANTNGSSVRLRDVARIEVGGQSYDTSGRLDGKPSSFIGVQLSPTANALGTA 120 +F +I+L+A+ +G++ RL DVAR+E+ Y LD KP+ I + +P ANAL + Sbjct: 247 GEFRDIILKASPDGATTRLGDVARVELAASEYGLRSLLDNKPAVAIPIFQAPGANALDVS 306 Query: 121 TAVHKKMEELAKYFPAGVKYTIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLFLQNIR 180 T V M+EL+ FP+ V Y+I YD ++FV+ SIE VV TL+EAI LV +V+ +FLQ R Sbjct: 307 TQVRAAMKELSADFPSSVSYSIVYDPTQFVRASIEAVVHTLLEAIALVVIVVIIFLQTWR 366 Query: 181 YTIIPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDAIVVVENVERIMSEE 240 +IIP + VPV+++GTF+ +L FG++IN L++FGMVLAIGI+VDDAIVVVENVER + Sbjct: 367 ASIIPLLAVPVSIIGTFSLMLGFGYTINALSLFGMVLAIGIVVDDAIVVVENVERNIG-A 425 Query: 241 GLSPADATRKAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQFSLSMVASMVFSVL 300 GLSP DAT +AM ++SG +I I L L+AVF+P+AF G G Y+QF++++ S V S Sbjct: 426 GLSPRDATYRAMQEVSGPIIAIALTLVAVFVPLAFMTGLTGQFYKQFAMTIAISTVIS-- 483 Query: 301 MAFTLTPALCATILKPVEKGHHHEKKGFFGWFNRKFN----------------TTANAYQ 344 AF + L + + KGH + W R+ + + N Sbjct: 484 -AFN-SLTLSPALAALLLKGHGDKPD----WLTRQMDRFLGGFFIRFNRFFNRASDNYGH 537 Query: 345 GVIGKMLSKAGRYMIVYVVIVAC-VGLLYVRLPASFLPNEDQGYIITNVQLPPGASTART 403 GV G ++ + G M VYV+++A +G+ Y+ +P F+P +D+ Y++ QLP GAS R+ Sbjct: 538 GVTG-VIKRKGATMGVYVLLLAATLGISYI-VPGGFVPGQDKQYLVAFAQLPNGASIDRS 595 Query: 404 TEVVKKIEEYYLKDPAVEHAIAVLGFSFSG--NGQNAALVFTPLKDWAER-DKSQSADAI 460 EV++K+ + LK+P V AIA G S +G N +A +VF LK + ER K S +AI Sbjct: 596 EEVMRKMSDIMLKEPGVASAIAFPGLSINGFTNSSSAGIVFVGLKPFEERKSKDLSGNAI 655 Query: 461 AGKAFGAFSQIKDAIVFPLNPPPIPELGNATGFTFRLQDRAGLGHDALVQARNQILGMAS 520 A F IK+A PPP+ LG GF +++DR LG+ L +A + A+ Sbjct: 656 AASLNKKFGSIKEAFTAVFPPPPVMGLGTLGGFKMQIEDRDALGYAELDKAAQAFMKAAA 715 Query: 521 QSKVLAGVRPEGLEDAPQLQLDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPNQGRQ 580 + L + + PQL +++DR KA LG+P + + + + LGS YVNDF GR Sbjct: 716 KEPALGPMFSSYQINVPQLDVELDRVKAKQLGIPVTDVFNTMQIYLGSLYVNDFNRFGRV 775 Query: 581 QRVIVQADANRRLQPEDLTSLYARNSNGGMVPFSAFVTAKWINGPVQLIRYNGYPAMKIA 640 +V QADA R + ED+ L RN G MVP S+ V K GP ++RYNGY A I Sbjct: 776 YQVRAQADAPFRAKAEDIAQLKTRNDAGEMVPLSSVVKVKQTFGPEMVVRYNGYTAADIN 835 Query: 641 GGAAPGRSTGE-AMAEMESYVAKLPPGFGFEWTGQSLEEKTSGNQAPALYALSLIAVFLV 699 GG APG S+ + A A LP G FEWT + ++ +GN ++ +S++ VFLV Sbjct: 836 GGPAPGYSSDQAQAAAERVAAATLPRGIKFEWTDLTYQKILAGNAGVWVFPISVLLVFLV 895 Query: 700 LAALYESTSIPLAVMLVVPLGILGALLGVTLRAMPNDVYFKVGMIAVVGLSAKNAILIIE 759 LAALYES ++PLAV+L+VP+ IL AL GV L N+++ ++G++ +VGLSAKNAILI+E Sbjct: 896 LAALYESLTLPLAVILIVPMSILAALTGVWLTRGDNNIFTQIGLMVLVGLSAKNAILIVE 955 Query: 760 FAKDLQAQGKGLIEATLEAVHLRFRPIIMTSLAFILACC 798 FA++L+ QG+ ++A +EA LR RPI+MTS+AFI+ Sbjct: 956 FARELEMQGRTAVQAAIEASRLRLRPILMTSIAFIMGVV 994 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,456,533 Number of extensions: 105095 Number of successful extensions: 491 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 430 Number of HSP's successfully gapped: 19 Length of query: 817 Length of database: 1,619,870 Length adjustment: 93 Effective length of query: 724 Effective length of database: 1,179,515 Effective search space: 853968860 Effective search space used: 853968860 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 135 (56.6 bits)