BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0138.p
         (329 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311403|ref|YP_003775495.1| polymixin resistance glycosyltr...   113   2e-26

>gi|300311403|ref|YP_003775495.1| polymixin resistance
           glycosyltransferase transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 318

 Score =  113 bits (283), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 143/307 (46%), Gaps = 9/307 (2%)

Query: 2   KLSIVATLYQSAPYIEEFYQRCSRCAQALVGDDYEIVFVNDGSPDDSLGLTIRLGESDPH 61
           +LS+V  +Y     + + ++R      AL G  YE++FVNDGS D S G+        P 
Sbjct: 4   ELSVVIPVYNEESGLSKLFERLYPALDAL-GYSYEVIFVNDGSRDRSAGILAEQYRLRPD 62

Query: 62  VV-VVDLSRNFGHHKAMMTGLAHAQGDRVFLIDADLEEDPEFLLPFSEKMNGSDCDVVYG 120
           V  VV  + N+G H A+M G    +GD V  +DADL+  PE +     KM     D V  
Sbjct: 63  VTRVVLFNGNYGQHMAIMAGFEATRGDIVVTLDADLQNPPEEIGNLVAKMR-EGYDYVGS 121

Query: 121 VQEQRKGGWFERWSGELFYRSFRSWTGIALPQNVVTARLMSRRYVNALLLHTEREVFIAG 180
           ++ +R+   +  ++ +   R     T I +       R   R  ++ +    E   F+  
Sbjct: 122 IRRKRQDSAWRTYASKAMNRLREKITRIKMTDQGNMLRAYGRNVIDLVNKCREINTFVPA 181

Query: 181 LWHITGFDQQPMLV----KKHSTSETTYTFRKKMSQFVNSVTSFSNAPLIGIFYIGVSIS 236
           L +   F + P  +    ++ S  E+ Y+    +    + VT FS  PL     +G+ +S
Sbjct: 182 LAYT--FSRNPTEIVVEHEERSAGESKYSLYSLIRLNFDLVTGFSLVPLQFFSLLGIGLS 239

Query: 237 VLAMLCIAYIVGQWLLIARHVSGWTSLMASVWLLGGMIISFIGVVGLYLSRIFSEVKQRP 296
             +      IV + LLI   V G  +L A  + L G+I+  IG++G Y+ RI+ +V+ RP
Sbjct: 240 FASAALFILIVLRRLLIGAEVGGVFTLFAITFFLMGVILFSIGLLGEYIGRIYMQVRARP 299

Query: 297 YTIVRHV 303
             +V+ +
Sbjct: 300 RYVVQAI 306


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.138    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,064,115
Number of extensions: 44611
Number of successful extensions: 161
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 243
Effective length of database: 1,212,660
Effective search space: 294676380
Effective search space used: 294676380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)