BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0133.p
         (130 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311403|ref|YP_003775495.1| polymixin resistance glycosyltr...    64   5e-12

>gi|300311403|ref|YP_003775495.1| polymixin resistance
           glycosyltransferase transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 318

 Score = 63.5 bits (153), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 58/107 (54%), Gaps = 8/107 (7%)

Query: 2   AGVTKYPLKKMLKFATDGILSFSSKPLQ----MSIGLGMSAAGLAFLGILYALFLRIFTQ 57
           AG +KY L  +++   D +  FS  PLQ    + IGL  ++A L  L +L     R+   
Sbjct: 202 AGESKYSLYSLIRLNFDLVTGFSLVPLQFFSLLGIGLSFASAALFILIVLR----RLLIG 257

Query: 58  VWVEGWTALMIAVLFIGGVQLVSIGILGEYIGRIYSEIKRRPLYVVS 104
             V G   L     F+ GV L SIG+LGEYIGRIY +++ RP YVV 
Sbjct: 258 AEVGGVFTLFAITFFLMGVILFSIGLLGEYIGRIYMQVRARPRYVVQ 304


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.142    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 401,553
Number of extensions: 15964
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 1
Length of query: 130
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 55
Effective length of database: 1,264,745
Effective search space: 69560975
Effective search space used: 69560975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 125 (52.8 bits)