BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0129.p
         (239 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313483|ref|YP_003777575.1| NAD_dependent epimerase/dehydra...    60   2e-10
gi|300313693|ref|YP_003777785.1| dTDP-glucose 4,6-dehydratase [H...    55   6e-09

>gi|300313483|ref|YP_003777575.1| NAD_dependent
           epimerase/dehydratase [Herbaspirillum seropedicae SmR1]
          Length = 333

 Score = 59.7 bits (143), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 110/241 (45%), Gaps = 16/241 (6%)

Query: 1   VVHLAAIAFVG-HADAGAFYDVNVLGTMNLLDA-LARVPKRPAAVLLAARRXSSANIYGN 58
           V HLAA+  +  H    + +DVNV GT N+++A +A+  KR           SSA++YG+
Sbjct: 81  VFHLAALWLLQCHEYPRSAFDVNVRGTFNVMEACVAKGVKRLVY-------SSSASVYGD 133

Query: 59  CDVSPIGESQSPAPANHYAMSKLAMEYMARNYLDR--LPIVFARPFNYTGAGQ--HASF- 113
               P+ E       N Y  +K+A E M R++  R  L  V  R  N  G  Q  H ++ 
Sbjct: 134 AVREPMDEDHPYNNKNFYGATKIAGETMLRSFHHRYGLNYVGLRYMNVYGPRQDYHGAYI 193

Query: 114 -VIPKLVDHFARRASVVELGNLDVEREFNDVRTVCDAYLALLDKGAPGQCYNVCSGQPVT 172
            VI K++D   +  S   +G+     +F  V     A +  +      Q YNV +G+  +
Sbjct: 194 AVIMKMLDAIDKGESPTIMGDGSEAFDFVAVEDCGLANVCAMKAETADQYYNVGTGKRTS 253

Query: 173 LRVVIALLQEITGHSLEVRVNPAFVRASEVRTLCGSPALLEQAIGPLHHPGLRATLQWML 232
           L+ +  LL EITG    +   P   +A+ VR   G P      IG      LR  L+ ++
Sbjct: 254 LKELAELLLEITGCDKPITFAPR-SQATLVRNRIGCPKKASSEIGFTATIDLREGLKRLI 312

Query: 233 D 233
           +
Sbjct: 313 E 313


>gi|300313693|ref|YP_003777785.1| dTDP-glucose 4,6-dehydratase
           [Herbaspirillum seropedicae SmR1]
          Length = 338

 Score = 54.7 bits (130), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 110/252 (43%), Gaps = 20/252 (7%)

Query: 1   VVHLAAIAFVGHADAG--AFYDVNVLGTMNLLDA-LARVPKRPAAVLLAAR--RXSSANI 55
           VVH AA + V  + AG   F   NV GT ++L A        PAA   A R    S+  +
Sbjct: 77  VVHCAAESHVDRSIAGPAVFIQTNVNGTFSMLSAAYDYWSTLPAAEQAAFRFLHISTDEV 136

Query: 56  YGN--CDVSPIGESQSPAPANHYAMSKLAMEYMARNYLDR--LPIVFARPFNYTGAGQHA 111
           +G+   D  P  E+   AP + Y+ SK A +++ R +     LP++     N  G     
Sbjct: 137 FGSLAADAPPFTETSPYAPNSPYSASKAASDHLVRAFHSTYGLPVLITHCSNNYGPFHFP 196

Query: 112 SFVIPKLVDHFARRASVVELGNLDVEREFNDVRTVCDAYLALLDKGAPGQCYNV-CSGQP 170
             +IP ++ +      +   G+    R++  V   C A   +L +  PG+ YN+  + + 
Sbjct: 197 EKLIPLVITNALAGQPLPIYGDGQQVRDWLHVADHCRAIELVLARARPGESYNIGGNSEK 256

Query: 171 VTLRVVIA---LLQEITGHSL-EVRVNPAFV--RASEVRTLCGSPALLEQAIG--PLH-- 220
             L VV+    LL E+   +  + R    FV  R    R      + +++ +G  P H  
Sbjct: 257 TNLEVVLTLCDLLDELAPKAQGQYRDQICFVQDRPGHDRRYAVDTSKIQRELGWSPQHAF 316

Query: 221 HPGLRATLQWML 232
             GLR T+QW L
Sbjct: 317 RQGLRQTVQWFL 328


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 731,225
Number of extensions: 27923
Number of successful extensions: 71
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 2
Length of query: 239
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 157
Effective length of database: 1,231,600
Effective search space: 193361200
Effective search space used: 193361200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)