BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0123.p
         (424 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309817|ref|YP_003773909.1| UDP-glucose 4-epimerase [Herbas...    57   3e-09

>gi|300309817|ref|YP_003773909.1| UDP-glucose 4-epimerase
           [Herbaspirillum seropedicae SmR1]
          Length = 320

 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 122/287 (42%), Gaps = 56/287 (19%)

Query: 1   MKIAITGATGYIGRQLAALALHQGHHPLLLTRTAPAADAGAWLRYDLF----------DT 50
           M I +TGA+G++GR L +    +G H   L R A    +   +  +            +T
Sbjct: 1   MHILVTGASGFVGRALLSRLDSEGQH---LLRGAFRPSSETVMDRERIERTVISGLDPET 57

Query: 51  DALTLPGDVQAVVHLAFNPRVATEADGD-------AEMVAALRLLDAAAAVGA-RFVFVS 102
           D      +++AVVH A    V  E  GD         +  +L L   A   G  RF+F+S
Sbjct: 58  DWSAALHNIEAVVHCAARVHVMNETAGDPLAEFRRINLEGSLALARQAQQAGVQRFIFLS 117

Query: 103 S------QTA--------REDAPT-AYGRTKWRIEQLVLQRGGS------VVRPGQVYGG 141
           S      QT+         + APT  YG +K   EQ +L+ G +      ++RP  VYG 
Sbjct: 118 SIKVNGEQTSLGRPFTADDKPAPTDPYGISKMEAEQALLELGRTGKMQVVIIRPVLVYGP 177

Query: 142 AAMGLFGLLVNLVDRLPMLPAFLPAPLIQPVHVDDLALALLRIAQL-------PDATPEV 194
                 G+  N +  +  L   +P PL    H     +AL  +  L       P A  +V
Sbjct: 178 ------GVKANFLSMMRWLDKGMPLPLGGITHNRRSLVALDNLVDLITVCLAHPAAAGQV 231

Query: 195 HLIAQSQALSFTTFLRAIAASHVRKTRFFVPVPTALVRLAVRLLGAE 241
            L +  + LS T  L+ +  + + K+   +PVP + + LA RL+G +
Sbjct: 232 FLASDGEDLSTTGMLQRLGRA-LDKSPTLLPVPASWLTLAARLMGKK 277


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,172,934
Number of extensions: 43203
Number of successful extensions: 254
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 336
Effective length of database: 1,203,190
Effective search space: 404271840
Effective search space used: 404271840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)