BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0117.p
         (359 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313001|ref|YP_003777093.1| glycosyl transferase, group 2 f...    67   3e-12

>gi|300313001|ref|YP_003777093.1| glycosyl transferase, group 2
           family protein [Herbaspirillum seropedicae SmR1]
          Length = 262

 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 91/213 (42%), Gaps = 8/213 (3%)

Query: 29  VVIPSYRVTRHILGVIEAMGPDVAQIYVVDDKCPDGSGDFVAQ-HCTDPR-VRILRHEVN 86
           VVIP +     I  V+ A+        +VDD C  G    + Q    DP+   +L H  N
Sbjct: 11  VVIPVFDHEHAIGAVVAAVRSHGLPCILVDDGCSPGCAAVLRQLAAADPQATTLLVHPHN 70

Query: 87  QGVGGAVMTGYQAAVEGGADVIVKVDGDGQMDPELIPYFVQPIVDGIADYTKGNRFYDLE 146
           QG GGAVMTG + A   G    +++D DGQ D   IP F+            G   YD  
Sbjct: 71  QGKGGAVMTGLRHAAAAGYTHALQIDADGQHDSADIPRFLAASQAAPQAVINGRPVYD-- 128

Query: 147 EIGAMPPMRLFGNTVLSLMAKFSTGYWDLFDPTNGFTAI-HADVARHLPYDKISRRYFFE 205
              ++P  RL+   +  +    +T   ++ D   GF     A   + +    I RR  F+
Sbjct: 129 --ESVPKGRLYARYLTHVWVWINTLSLEIVDSMCGFRLYPLAPTLQLIDRTTIGRRMDFD 186

Query: 206 TDILFRLNTLRAAVIDIPMAAKY-GDEVSGLKI 237
           T+IL RL      V ++    +Y  D VS  ++
Sbjct: 187 TEILVRLYWRGLRVHNLATRVRYPADGVSHFQV 219


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.141    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,129,773
Number of extensions: 49065
Number of successful extensions: 115
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 273
Effective length of database: 1,212,660
Effective search space: 331056180
Effective search space used: 331056180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)