BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0114.p (458 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPas... 77 3e-15 gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [H... 76 5e-15 gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPas... 72 7e-14 gi|300313359|ref|YP_003777451.1| multidrug ABC transporter ATPas... 71 2e-13 gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter AT... 70 3e-13 >gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 389 Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 68/248 (27%), Positives = 111/248 (44%), Gaps = 33/248 (13%) Query: 60 ALSDISLEIRKGETVGIIGRNGSGKSTLLQIICGTLNPSAGSVEVKGRVAALLE------ 113 AL DI LEI G GIIGR+G+GKS+LL+ I P++G VEV A L+ Sbjct: 57 ALQDIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLERPTSGRVEVDDVDLATLDETQLVA 116 Query: 114 -------LGSGFN--PEYSGRENVFMNGQLLGLTRQQIEARFKDIEAFADIGDFMDQPVK 164 + FN + +N+ + ++ G+ R QI R ++ A + D D + Sbjct: 117 LRRRIGMIFQHFNLLAAKTVFDNIALPLRVAGVPRAQITQRVHELLALVGLQDKADSYPR 176 Query: 165 AYSSGMYVRLAFAVIAHVDADILVIDEALAVGDAFFTQKCMRFLRGF-MKTG-TVLFVSH 222 S G R+ A +IL+ DEA + D TQ ++ LR K G T++ ++H Sbjct: 177 RLSGGQKQRVGIARALASGPEILLCDEATSALDPETTQSILQLLRDINRKLGITIILITH 236 Query: 223 DTASIKNLCTHAVWIDRGHMRSAGE-------PRHVCDLYL---------QEFYEAQQGK 266 + + I+ + + +++G + GE P+H L QE +A Q + Sbjct: 237 EMSVIREIADRVLVLEQGRVAELGEVWQVFGKPQHAATRALLAPLQHGLPQELQQALQPQ 296 Query: 267 SAVAKVAR 274 + + R Sbjct: 297 APAGRHER 304 >gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 349 Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 52/211 (24%), Positives = 91/211 (43%), Gaps = 15/211 (7%) Query: 59 HALSDISLEIRKGETVGIIGRNGSGKSTLLQIICGTLNPSAGSVEVKGRVAALLELGS-- 116 A+ +I E++ G+ ++G +G GKST L++I G PS+GS+ + GR L Sbjct: 17 QAVRNIDFEVKAGQFTVLLGPSGCGKSTTLRLIAGLDKPSSGSIHIGGRDVTQLPPAQRK 76 Query: 117 --------GFNPEYSGRENVFMNGQLLGLTRQQIEARFKDIEAFADIGDFMDQPVKAYSS 168 P S R+N+ ++ R E R K + + +++ S Sbjct: 77 ISMVFQSYALFPHLSVRDNILFGVRVRKEPRAGYETRLKRVADILGLAHLLERRPAQLSG 136 Query: 169 GMYVRLAFAVIAHVDADILVIDEALAVGDAFFTQKCMRFLRGFMK--TGTVLFVSHDTAS 226 G R+A DA + ++DE L+ DA Q+ R +R + T+++V+HD Sbjct: 137 GQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQQQLNMTMVYVTHDQTE 196 Query: 227 IKNLCTHAVWIDRGHMRSAGEPRHVCDLYLQ 257 ++ + + G + P DLY Q Sbjct: 197 AMSMADQVILLREGRIEQDAAP---ADLYAQ 224 >gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 345 Score = 72.4 bits (176), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 101/219 (46%), Gaps = 20/219 (9%) Query: 60 ALSDISLEIRKGETVGIIGRNGSGKSTLLQIICGTLNPSAGSVEVKGR------VAALLE 113 A+ + L IRKGE GIIGR+G+GKSTL++ + P++G + + G+ A L E Sbjct: 16 AVRKVDLSIRKGEIFGIIGRSGAGKSTLVRTLNLLNRPTSGRIVLDGQDLTSLSAAQLRE 75 Query: 114 LGSG-------FN--PEYSGRENVFMNGQLLGLTRQQIEARFKDIEAFADIGDFMDQPVK 164 G FN S +N+ + +L G ++ +I A+ + + + D+ Sbjct: 76 ARRGIGMIFQHFNLLSSRSVYDNIALPLELAGKSKAEIAAKVEPLLELVGLTALRDRYPA 135 Query: 165 AYSSGMYVRLAFAVIAHVDADILVIDEALAVGDAFFTQKCMRFLRGFMKT--GTVLFVSH 222 S G R+ A D +L+ DEA + D T+ + LR K T++ ++H Sbjct: 136 QISGGQKQRVGIARALANDPKVLLSDEATSALDPETTRSILELLRKINKELGLTIVLITH 195 Query: 223 DTASIKNLCTHAVWIDRGHMRSAGEPRHVCDLYLQEFYE 261 IK +C ++ G + GE V D++ Q +E Sbjct: 196 QMEVIKQICDRVAVMEAGQVIEQGE---VLDVFRQPRHE 231 >gi|300313359|ref|YP_003777451.1| multidrug ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 303 Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 76/292 (26%), Positives = 125/292 (42%), Gaps = 36/292 (12%) Query: 59 HALSDISLEIRKGETVGIIGRNGSGKSTLLQIICGTLNPSAGSVEVKGR------VAALL 112 AL +SL I +GE G++G NG+GK+TL+ II G +G+V + G AA + Sbjct: 17 QALGGVSLAIEEGEFFGLLGPNGAGKTTLISIIAGLNRADSGTVTIHGHDVVSDYRAARM 76 Query: 113 ELGS-----GFNPEYSGRENVFMNGQLLGLTRQQIEARFKDIEAFADIGDFMDQPVKAYS 167 +LG F+P ++ RE + M GL+ + ++ D+ + D ++A S Sbjct: 77 KLGVVPQELVFDPFFTVRETLRMQSGYFGLSSN--DKWIDEVMENLDLTNKADTNMRALS 134 Query: 168 SGMYVRLAFAVIAHVDADILVIDEALAVGDAFFTQKCMRFLRGFMKTG-TVLFVSHDTAS 226 GM R+ A ++V+DE A D Q +F+ + G T++ +H Sbjct: 135 GGMKRRVLVAQALVHKPPVIVLDEPTAGVDVELRQTLWQFIGRLNREGHTIVLTTHYLEE 194 Query: 227 IKNLCTHAVWIDRGHM----RSAGEPRHVCDLYLQEFYEAQQGKSAVAKVARSSIRAEGP 282 + LC + G + + G R + G V ++ R S+ Sbjct: 195 AQALCNRIAMLKFGKVVALDSTEGLIRRIS------------GSQMVLRLKRGSLPEGLK 242 Query: 283 SVDVRRDKI---NASNLR-NDLQVFTFDPEAAALGSGGAAITDVSFVGEDGE 330 S+ +++ N LR ND Q +P AAL + GA I D+ D E Sbjct: 243 SLVTHPEELLSGNKYTLRVNDYQ--EVEPILAALRAAGAEIDDLQLQQADLE 292 >gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 335 Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 70/254 (27%), Positives = 109/254 (42%), Gaps = 35/254 (13%) Query: 59 HALSDISLEIRKGETVGIIGRNGSGKSTLLQIICGTLNPSAGSVEVKGR----------V 108 HAL + L++ GE VG++G +G GKSTL ++ CG L+PS G V V GR Sbjct: 43 HALDKVDLKVLPGEVVGLVGESGCGKSTLGRVACGLLDPSDGQVLVNGRDRASLSSREEA 102 Query: 109 AALLELGSGFNPEYSGRENVFMNGQLLGLTRQ---QIEARFKD------IEAFADIGDFM 159 A L++ F Y+ Q++G Q ++E D + A D Sbjct: 103 EARLQVQMIFQNPYASLNPRLRIDQIVGEAAQVNGKVEGDLDDYVCQQLLRAGLDPA-LR 161 Query: 160 DQPVKAYSSGMYVRLAFAVIAHVDADILVIDEALAVGDAFFTQKCMRF---LRGFMKTGT 216 D+ +S G R+ A V +LV DEA+A D + + LR + T Sbjct: 162 DRYPHQFSGGQRQRIGIARALAVQPQMLVCDEAVAALDVSIQAQILNLFMDLRAELGL-T 220 Query: 217 VLFVSHDTASIKNLCTHAVWIDRGHMRSA-------GEPRHVCDLYLQEFYEAQQGKSAV 269 LF+SHD ++++ V + G + + G+P H Y Q A+ + Sbjct: 221 YLFISHDLGVVEHVSDRVVIMYLGRVVESAPVAELFGQPNHP---YTQALL-AEVPRMGA 276 Query: 270 AKVARSSIRAEGPS 283 K ++I+ E PS Sbjct: 277 RKKEFTAIKGEIPS 290 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,432,358 Number of extensions: 62699 Number of successful extensions: 461 Number of sequences better than 1.0e-08: 57 Number of HSP's gapped: 429 Number of HSP's successfully gapped: 58 Length of query: 458 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 370 Effective length of database: 1,203,190 Effective search space: 445180300 Effective search space used: 445180300 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)