BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0112.p
         (304 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313656|ref|YP_003777748.1| dTDP-4-dehydrorhamnose reductas...   282   3e-77
gi|300313503|ref|YP_003777595.1| dTDP-4-dehydrorhamnose reductas...    69   6e-13

>gi|300313656|ref|YP_003777748.1| dTDP-4-dehydrorhamnose reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 312

 Score =  282 bits (721), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 145/294 (49%), Positives = 191/294 (64%), Gaps = 2/294 (0%)

Query: 1   MKILVTGKNGQLGSELVRAFRGVAEVAAFDRQTLDLADIGQLRSLIRAQAPDVIINAAAY 60
           M+IL+TG +GQLG  L        E+ A   + LDLAD   L+S ++   P +I+NAAAY
Sbjct: 1   MRILLTGASGQLGQVLQPMLARHGELLAPSSRELDLADRQALQSFLQQARPGLIVNAAAY 60

Query: 61  TAVDRAETEQAAAHAINAQAPAVMAEEASALGAALIHYSTDYVFDGRKAGPYLETDPTDP 120
           TAVD+AE++ A A A+NA AP ++A++A  LGA L+H+STDYVFDG+ A PY+ETDPT P
Sbjct: 61  TAVDKAESDVARAEAVNALAPMILAQQAQMLGAPLVHFSTDYVFDGKSARPYVETDPTGP 120

Query: 121 QSVYGKTKLAGEQAIAAASDKFWIWRTSWVYGVHGGNFLKTMLRLASERTSLRVVADQFG 180
            +VYG+TKLAGEQ IAA  D +WI RTSWVYG +G NFLKTM RLA ER  L VV DQ G
Sbjct: 121 LNVYGRTKLAGEQGIAAHCDAYWILRTSWVYGCYGSNFLKTMWRLAGEREYLTVVDDQIG 180

Query: 181 APTFARAIAEATRDALMAGGNAGTPARVADTAGIYHFTGGGRTNWHGYAQYVIERAAEAG 240
           APT+   IA+     L  G +A    R  DT G+YH + GG T+WHG+AQ +++     G
Sbjct: 181 APTWTHTIADTLARMLAHGADAQQSVR--DTTGLYHLSAGGATSWHGFAQRILQLLRAQG 238

Query: 241 QPLNITAADIEAIPASAYPVPAPRPSNSCLSLEKFTQTFGLPIAAWQDDVDRCL 294
           +   +  A +  I + AYP  A RP NS L      +TF L +  W++ ++RCL
Sbjct: 239 ETALLDPALVRPIASDAYPAIAQRPRNSRLDTGLLRRTFSLSLPTWEEALERCL 292


>gi|300313503|ref|YP_003777595.1| dTDP-4-dehydrorhamnose reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 285

 Score = 68.6 bits (166), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 72/171 (42%), Gaps = 18/171 (10%)

Query: 1   MKILVTGKNGQLGSELVRAF--RGVAEVAAFDRQT-----------LDLADIGQLRSLIR 47
           MK+LV G +G +G  +      R   EV A  R             +DL++   +  L  
Sbjct: 1   MKVLVLGASGMIGRTMFHVLSQRPGWEVCAIVRAKTFEVGAPVVTGIDLSNQDHMERLFA 60

Query: 48  AQAPDVIINAAAYTAVDRAETEQAAAHAINAQAPAVMAEEASALGAALIHYSTDYVFDGR 107
            + PDV++N A  T           A  +NA  P  +A+      A LIH STD VF G 
Sbjct: 61  QRRPDVVVNCAGLTKHLPEGNAHIPALTMNALLPHRLAQLCDIADARLIHVSTDCVFSG- 119

Query: 108 KAGPYLETDPTDPQSVYGKTKLAGEQAIAAASDKFWIWRTSWVYGVHGGNF 158
            AG Y E D  D   VYG+TK  GE     A       RTS +   HG  F
Sbjct: 120 DAGNYKEQDTPDATDVYGRTKALGEVTAGNA----LTLRTSTIGHEHGTQF 166


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 984,719
Number of extensions: 41930
Number of successful extensions: 193
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 2
Length of query: 304
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 219
Effective length of database: 1,217,395
Effective search space: 266609505
Effective search space used: 266609505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)