BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0111.p
         (170 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313694|ref|YP_003777786.1| dTDP-6-deoxy-D-glucose-3,5 epim...   210   6e-56

>gi|300313694|ref|YP_003777786.1| dTDP-6-deoxy-D-glucose-3,5
           epimerase [Herbaspirillum seropedicae SmR1]
          Length = 181

 Score =  210 bits (534), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 101/169 (59%), Positives = 119/169 (70%)

Query: 1   VIIEPKVFGDDRGFFYESFNEQRFAEATGQRVNFVQDNHSRSARNVLRGLHYQIQQAQGK 60
           +++EP VF D RG F+E+FN ++F   TG    FVQDN S S   VLRGLHYQ+ Q QGK
Sbjct: 12  LVLEPTVFEDARGHFFEAFNARQFKALTGLSPEFVQDNQSHSKAGVLRGLHYQLHQPQGK 71

Query: 61  LVRVIMGEVYDVAVDIRRSSPHFGRWTAVRLSAENRRQLWIPPGFAHGFVVTTDYAEFLY 120
           LVRVI GE+ DV VD+RR SP FG+W +V LSA+NRRQLWIP GFAHGF V +D A+  Y
Sbjct: 72  LVRVIQGEITDVVVDLRRQSPSFGQWASVTLSAQNRRQLWIPEGFAHGFHVRSDIADVQY 131

Query: 121 KTTDYWAPQHERCIRWDDPALGIDWPLDGEPVLSAKDAVGALLADAEVF 169
           KTT YW+   ERCIRWDDP L IDW L   P+LS KD  G     AE+F
Sbjct: 132 KTTAYWSAPDERCIRWDDPDLAIDWQLTAPPLLSDKDRQGVYWRQAELF 180


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.139    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 552,399
Number of extensions: 21497
Number of successful extensions: 48
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 91
Effective length of database: 1,245,805
Effective search space: 113368255
Effective search space used: 113368255
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)