BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0105.p
         (456 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309813|ref|YP_003773905.1| phosphomannomutase [Herbaspiril...   857   0.0  
gi|300310717|ref|YP_003774809.1| phosphoglucosamine mutase [Herb...   102   6e-23

>gi|300309813|ref|YP_003773905.1| phosphomannomutase [Herbaspirillum
           seropedicae SmR1]
          Length = 458

 Score =  857 bits (2214), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/455 (90%), Positives = 433/455 (95%)

Query: 2   ISNSIFKAYDIRGIIDKTLDDQVAFQIGQAFGAAALAKGQKKVVIGRDGRLSGPSLSAAL 61
           +S SIFKAYDIRGII KTLD  VA++IGQAFGAAALAKGQKKVVIGRDGRLSGP L+A L
Sbjct: 4   LSPSIFKAYDIRGIIGKTLDGTVAYRIGQAFGAAALAKGQKKVVIGRDGRLSGPELAAEL 63

Query: 62  AKGLQAVGVDVIDLGMVATPMVYFGTHVLDTQSGIMVTGSHNPPDYNGFKMVLAGEAIHG 121
           A+GLQAVGVDVIDLGMVATPMVYFGTHVLDTQSGIMVTGSHNPPDYNGFKMVLAGEAIHG
Sbjct: 64  ARGLQAVGVDVIDLGMVATPMVYFGTHVLDTQSGIMVTGSHNPPDYNGFKMVLAGEAIHG 123

Query: 122 ETIQSLYQAIVKGEFPQGAGSYSTHDIKAAYIARMISDVKLARPLKIAVDCGNGVAGAFA 181
           ETIQ+LY AIVKG+FPQGAG Y+THDIKAAYI RM++DVKLARPLKIAVDCGNGVAGAFA
Sbjct: 124 ETIQALYHAIVKGDFPQGAGGYATHDIKAAYIERMLADVKLARPLKIAVDCGNGVAGAFA 183

Query: 182 GEIYRALGCEVTELFCEVDGNFPNHHPDPAHPENLQDLIRCLQETDNELGLAFDGDGDRL 241
           GEIYR LGCEVTELFCEVDG FPNHHPDPAHPENLQDLIRCL+ETD ELGLAFDGDGDRL
Sbjct: 184 GEIYRTLGCEVTELFCEVDGTFPNHHPDPAHPENLQDLIRCLRETDCELGLAFDGDGDRL 243

Query: 242 GLVTKDGQIIYPDRQLMLFAEDVLTRNPGKEILYDVKCTRHLAPWITARGGQPLMWKTGH 301
           GLVTKDGQIIYPDRQLMLFAEDVLTR+PGKEILYDVKCTRHLAPWITARGG+PLMWKTGH
Sbjct: 244 GLVTKDGQIIYPDRQLMLFAEDVLTRHPGKEILYDVKCTRHLAPWITARGGRPLMWKTGH 303

Query: 302 SLVKAKLRETGAPLGGEMSGHIFFKDRWFGFDDGLYAGVRMLELMARQSDPSAVLNALPQ 361
           SLVKAKLRETGAPLGGEMSGHIFFKDRWFGFDDGLYAGVRMLELMARQ+DPSAVLNALPQ
Sbjct: 304 SLVKAKLRETGAPLGGEMSGHIFFKDRWFGFDDGLYAGVRMLELMARQADPSAVLNALPQ 363

Query: 362 SVSTPELQLKLQEGENFALIGKLQSDARFEGAQDIITIDGLRVEYADGFGLARSSNTTPV 421
           SVSTPELQLKLQEGEN ALIGKLQ +A FEGAQ+II IDGLRVEY DGFGLARSSNTTPV
Sbjct: 364 SVSTPELQLKLQEGENVALIGKLQGEASFEGAQEIIAIDGLRVEYPDGFGLARSSNTTPV 423

Query: 422 VVLRFEAETPEALERIQGEFRKVILAARPDVTLPF 456
           VVLRFEAETPEAL RIQ +FR+ ILA RP+V LPF
Sbjct: 424 VVLRFEAETPEALARIQAQFRQAILAVRPEVALPF 458


>gi|300310717|ref|YP_003774809.1| phosphoglucosamine mutase
           [Herbaspirillum seropedicae SmR1]
          Length = 444

 Score =  102 bits (255), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 166/377 (44%), Gaps = 20/377 (5%)

Query: 23  QVAFQIGQAFGAAALAKGQKKVVIGRDGRLSGPSLSAALAKGLQAVGVDVIDLGMVATPM 82
           ++ +  G+    A     +  V+IG+D R+SG  L AAL  G  A GVDV   G + TP 
Sbjct: 27  RLGYAAGKVLAKAKDGMTRPTVLIGKDTRISGYMLEAALEAGFAAAGVDVWLAGPLPTPA 86

Query: 83  VYFGTHVLDTQSGIMVTGSHNPPDYNGFKMVLAG-----EAIHGETIQSLYQAIVKGEFP 137
           V + T  L   +G++++ SHNP   NG K   A      +++  +   +L Q +      
Sbjct: 87  VAYLTRALRLSAGVVISASHNPYHDNGIKFFSASGNKLPDSVEADIEAALEQPMDCVPSE 146

Query: 138 QGAGSYSTHDIKAAYIARMISDVKLA---RPLKIAVDCGNGVAGAFAGEIYRALGCEVTE 194
           +   +    D    YI    S    A   R +++ VDC +G A   A  ++  LG EV  
Sbjct: 147 KLGKARRLSDAPGRYIEFCKSTFPNAMNLRGMRLVVDCAHGAAYNIAPHVFHELGAEVIT 206

Query: 195 LFCEVDGNFPNHHPDPAHPENLQDLIRCLQETDNELGLAFDGDGDRLGLVTKDGQIIYPD 254
           +  + DG   N       P+    L+  ++E   +LG+A DGD DRL +V  +G+I   D
Sbjct: 207 IGNQPDGLNINEDCGATAPKT---LVASVREYRADLGIALDGDADRLIMVDGEGRIYNGD 263

Query: 255 RQLMLFAEDVLTRNPGKEILYDVKCTRHLAPWITARGGQPLMWKTGHSLVKAKLRETGAP 314
             L L  +D L   P    +  +     L       G      K G   V   L+E G  
Sbjct: 264 ELLYLMVKDRLATGPVHGAVGTLMTNMALEVAFKKMGVPFERAKVGDRYVLEVLQEKGWV 323

Query: 315 LGGEMSGHIFFKDRWFGFDDGLYAGVRMLELMARQSDPSAVLNA----LPQSVSTPELQL 370
           LGGE SGH+   D+     DG+ + +++L  + R     A L +     PQS+    + +
Sbjct: 324 LGGEGSGHLLALDK-HTTGDGIVSALQVLSALKRSGKTLAELTSDISMYPQSL----VNV 378

Query: 371 KLQEGENFALIGKLQSD 387
           K+  G ++     LQ++
Sbjct: 379 KIPAGYDWKSNTALQAE 395


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.139    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,485,551
Number of extensions: 66594
Number of successful extensions: 224
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 2
Length of query: 456
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 368
Effective length of database: 1,203,190
Effective search space: 442773920
Effective search space used: 442773920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)