BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0104.p (662 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313507|ref|YP_003777599.1| polysaccharide biosynthesis pro... 721 0.0 gi|300313504|ref|YP_003777596.1| galactose-1-phosphate uridylylt... 152 9e-38 >gi|300313507|ref|YP_003777599.1| polysaccharide biosynthesis protein [Herbaspirillum seropedicae SmR1] Length = 648 Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/648 (54%), Positives = 468/648 (72%), Gaps = 19/648 (2%) Query: 1 VLDLPRLNKQAIVATIDVLISLLATWIAFSLRLDSLHWPQGYQWHVYQIAPVLMLPIFVR 60 +L LPR K+ + ++D+ + +L W+A+ LRL G + +L LPIF+ Sbjct: 12 ILALPRATKRLVAVSVDMGLCVLTVWLAYYLRLGEFVALSGTALWAAGASVMLALPIFIV 71 Query: 61 MGLYRSVFRYTGIAAIVTIAKAVALYGLLLFTLLVWLALPGVPRSLGVLQPLLLLVMVGG 120 GLYR++FRY+G A++ +A+AV +YGLL ++ +++PGVPR++G++QP+LLL+ VG Sbjct: 72 SGLYRAIFRYSGWPALLAVARAVGIYGLLYASIFTSISVPGVPRTVGIIQPILLLLFVGA 131 Query: 121 SRAFARLWLS-QVDSKRKHLRQSRLLVYGAGQVGAQIAEAMERQHQLVLFGFLEDNRELY 179 SRA AR+WL Q S K + ++L+YGAG G Q+ AM H++ + GFL+D+ L+ Sbjct: 132 SRALARVWLGDQYLSILKQASRPKVLIYGAGSTGRQLVAAMASSHEMQVVGFLDDDDRLH 191 Query: 180 GKTINGRRVYPASEAERLIETFAITDILLALPSISRARRKEIIEKLRPFHVHIRSVPDLA 239 G +NG+ +Y ++ L T +I+++LLA+PS+SR RR EI+ ++R V +R++P + Sbjct: 192 GHVLNGQPIYNPADLSSLASTLSISNVLLAMPSLSRKRRNEILAQIRTARVAVRTLPSVT 251 Query: 240 DLAQGKVAITDAHELDILDLLGREPVLPNPALVGRNVTNKVVLVTGAGGSIGSELCRQIL 299 DLAQG+V ++D ELDI DLLGREPV+PN L+ NV +KVV+VTGAGGSIGSELCRQIL Sbjct: 252 DLAQGRVNVSDLRELDIDDLLGREPVMPNHILLAMNVRSKVVMVTGAGGSIGSELCRQIL 311 Query: 300 SSRPSKLLLFEQNEYNLYTIHRDLQQRQASVSPGTELIPLLGDVCHFDRISQVCRTWQPR 359 + PSKLLL EQ+E+ LY IH+ L+++ A L+PLL V +RI ++ TW P Sbjct: 312 AVGPSKLLLIEQSEFALYAIHQQLEEKLADRD--IVLVPLLASVQDSERIREIMSTWHPD 369 Query: 360 TIYHAAAYKHVPLVEHNPVEGVTNNVFGTYCVARAAIENQVSDYVLISTDKAVRPTNIMG 419 T+YHAAAYKHVPLVEHNP EG+ NNV GT A+AA EN V+D+VLISTDKAVRPTNIMG Sbjct: 370 TVYHAAAYKHVPLVEHNPAEGIKNNVLGTLRTAQAATENGVADFVLISTDKAVRPTNIMG 429 Query: 420 ASKRMAEMVLQSLSDVEVVPRFLGQEANGTGTRNLTRFSMVRFGNVLGSSGSVVPLFREQ 479 ASKR+AEMVLQ+++ T T+FSMVRFGNVLGSSGSVVP FR+Q Sbjct: 430 ASKRLAEMVLQAIA----------------ATSPGTKFSMVRFGNVLGSSGSVVPKFRQQ 473 Query: 480 IKAGGPITLTDPEVTRYFMLIPEAVQLVLQAGAMTEGGDVFVLDMGEPVRILDLARRMVE 539 I+ GGPITLT ++TRYFM IPEA QLV+QAGAM +GGDVFVLDMG+ VRI+DLARRM+E Sbjct: 474 IRDGGPITLTHADITRYFMTIPEASQLVIQAGAMAKGGDVFVLDMGQAVRIMDLARRMIE 533 Query: 540 LSGLSVRDEHNPDGDIEIQTVGLRPGEKLYEELLIGEQPAPTAHPRIMTAHEDFIPWDRL 599 LSGL+V+DE NP+GDI I+ GLRPGEKLYEELLIG+ P PT+H RIM AHE+FIPW L Sbjct: 534 LSGLTVKDELNPEGDIAIEITGLRPGEKLYEELLIGDNPKPTSHSRIMKAHEEFIPWAEL 593 Query: 600 AEELRHLHDALQANDIGAIRALLHKLVSGYQPAAEIVDWAFVEKRRQA 647 L L AL ND+G IR ++ KLV+GY P+ EIVDW ++E+ +A Sbjct: 594 EARLSALEMALNVNDVGVIRLMMEKLVTGYTPSDEIVDWVYLEQEAEA 641 >gi|300313504|ref|YP_003777596.1| galactose-1-phosphate uridylyltransferase [Herbaspirillum seropedicae SmR1] Length = 336 Score = 152 bits (384), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 106/303 (34%), Positives = 153/303 (50%), Gaps = 37/303 (12%) Query: 278 NKVVLVTGAGGSIGSELCRQILSSRPSKLLLFEQNEYNLYTIHRDLQQRQASVSPGTELI 337 + V+++TG GS G + + L++ ++ +F ++E +Q ++ E + Sbjct: 4 DSVLMITGGTGSFGQTVLNRFLNTGVREIRVFSRDEK---------KQEDLRIALNNEKL 54 Query: 338 PL-LGDVCHFDRISQVCRTWQPRTIYHAAAYKHVPLVEHNPVEGVTNNVFGTYCVARAAI 396 +GDV D + + ++HAAA K VP E P+E V NV GT V R + Sbjct: 55 RFYIGDVRDPDSLRAAMKGVD--YVFHAAALKQVPSCEFYPMEAVKTNVIGTENVLRVSS 112 Query: 397 ENQVSDYVLISTDKAVRPTNIMGASKRMAEMVLQSLSDVEVVPRFLGQEANGTGTRNLTR 456 E V V++STDKAV P N MG SK MAE V+ + A T + T Sbjct: 113 ECGVRRVVVLSTDKAVYPINAMGISKAMAEKVMVA--------------AARTQRQGETV 158 Query: 457 FSMVRFGNVLGSSGSVVPLFREQIKAGGPITLTDPEVTRYFMLIPEAVQLVLQAGAMTEG 516 F R+GNV+ S GSV+PLF QIKA PIT+TDP +TR+ M + ++V LVL A + Sbjct: 159 FCATRYGNVMASRGSVIPLFVSQIKAEKPITITDPNMTRFLMSLEDSVDLVLYAFQHGQQ 218 Query: 517 GDVFVLDMGEPVRILDLARRMVELSGLSVRDEHNPDGDIEIQTVGLRPGEKLYEELLIGE 576 GD+FV + DLA + EL D ++T+G R GEKLYE L+ E Sbjct: 219 GDIFV-QKAPASTVADLASALKELFS----------SDTVVKTIGTRHGEKLYESLISRE 267 Query: 577 QPA 579 + A Sbjct: 268 EMA 270 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.138 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,966,279 Number of extensions: 83423 Number of successful extensions: 297 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 291 Number of HSP's successfully gapped: 2 Length of query: 662 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 571 Effective length of database: 1,188,985 Effective search space: 678910435 Effective search space used: 678910435 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 134 (56.2 bits)