BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0103.p
         (191 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313506|ref|YP_003777598.1| galactosyltransferase [Herbaspi...   271   3e-74
gi|300311305|ref|YP_003775397.1| glucosyltransferase involved in...   124   5e-30
gi|300312044|ref|YP_003776136.1| lipopolysaccharide synthesis su...   114   5e-27

>gi|300313506|ref|YP_003777598.1| galactosyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 186

 Score =  271 bits (693), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 128/186 (68%), Positives = 153/186 (82%)

Query: 6   MKRFFDIFVAVAACLVLALPMLLVAILVKLTSRGPVLYWSDRVGQDNRIFSMPKFRSMKT 65
           MKR FD  VA+ A ++LA+P+++V + V+LTS GP LYWS+RVG+ NRIF MPKFRSM+ 
Sbjct: 1   MKRLFDFAVALVASVLLAIPIVMVMLAVRLTSPGPALYWSERVGRHNRIFKMPKFRSMRI 60

Query: 66  GTPAVATHLLTDSGSHLTPIGGLLRKTSLDELPQLWSIVRGDMSLVGPRPALYNQHDLIA 125
            TPAVATHLL D    LTPIG  LRK+SLDELPQLWSI+RGDMSLVGPRPAL+NQ DLI 
Sbjct: 61  DTPAVATHLLEDPAQWLTPIGSFLRKSSLDELPQLWSILRGDMSLVGPRPALFNQDDLIT 120

Query: 126 LRSERGVHRLKPGLTGWAQVNGRDELPIPVKVQFDEQYLRQQSFFFDLRILWMTVAKVLG 185
           LR+ +GVH L PGLTGWAQ+NGRDELPIP KV+ D +YL+++SF FDL+ILWMT  KVL 
Sbjct: 121 LRTSQGVHELVPGLTGWAQINGRDELPIPDKVRLDAEYLQRRSFLFDLKILWMTALKVLA 180

Query: 186 RDGISH 191
           R G+SH
Sbjct: 181 RHGVSH 186


>gi|300311305|ref|YP_003775397.1| glucosyltransferase involved in
           lipopolysaccharide synthesis protein [Herbaspirillum
           seropedicae SmR1]
          Length = 441

 Score =  124 bits (311), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 78/190 (41%), Positives = 110/190 (57%), Gaps = 7/190 (3%)

Query: 6   MKRFFDIFVAVAACLVLALPMLLVAILVKLTSRGPVLYWSDRVGQDNRIFSMPKFRSMKT 65
           +KR  DI +A    L+L   ++++AI VK TS GPV++   R G D     + KFRSM  
Sbjct: 250 VKRVSDILLATVILLMLLPVLVVIAICVKATSPGPVIFKQRRYGLDGEEIVVYKFRSMTV 309

Query: 66  GTPAVATHLLTDSGSHLTPIGGLLRKTSLDELPQLWSIVRGDMSLVGPRPALYNQHDLI- 124
                     T   + LT IGG LRK+SLDELPQ  ++++G MS+VGPRP     ++L  
Sbjct: 310 LEDGANVQQATKGDARLTKIGGFLRKSSLDELPQFVNVLQGRMSIVGPRPHAVAHNELYR 369

Query: 125 -ALRSERGVHRLKPGLTGWAQVNG-RDELP----IPVKVQFDEQYLRQQSFFFDLRILWM 178
             ++     H++KPG+TGWAQVNG R E      +  +++FD +YLR+ S  FDL I+  
Sbjct: 370 KQIKGYMLRHKVKPGITGWAQVNGLRGETETLDKMKARIEFDLEYLRRWSLTFDLWIIVQ 429

Query: 179 TVAKVLGRDG 188
           TV  VL R+ 
Sbjct: 430 TVRLVLKREN 439


>gi|300312044|ref|YP_003776136.1| lipopolysaccharide synthesis sugar
           transferase [Herbaspirillum seropedicae SmR1]
          Length = 461

 Score =  114 bits (285), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 71/185 (38%), Positives = 104/185 (56%), Gaps = 6/185 (3%)

Query: 6   MKRFFDIFVAVAACLVLALPMLLVAILVKLTSRGPVLYWSDRVGQDNRIFSMPKFRSMKT 65
            KR FD+  +     +L+  ML  AI + L  RGPVLY  +RVG++N  F + KFRSM+ 
Sbjct: 272 FKRSFDLITSCIMLPLLSPLMLGAAICIWLEDRGPVLYRQERVGKNNEHFMVLKFRSMRV 331

Query: 66  GTPAVATHLLTDSGS-HLTPIGGLLRKTSLDELPQLWSIVRGDMSLVGPRPA--LYNQHD 122
                 T     SG   +T +G ++RK  +DELPQL++++RGDMS VGPRP    + +  
Sbjct: 332 DAEKAGTPQWASSGDPRITRVGNVMRKYRIDELPQLFNVLRGDMSFVGPRPERPYFVEQF 391

Query: 123 LIALRSERGVHRLKPGLTGWAQVN---GRDELPIPVKVQFDEQYLRQQSFFFDLRILWMT 179
              +      H +KPG+TGWAQV    G  +     K+Q+D  Y++  S F D+ IL  T
Sbjct: 392 AREITFYNVRHCVKPGITGWAQVRYKYGASKDDAVQKLQYDLYYVKNNSLFLDVLILIDT 451

Query: 180 VAKVL 184
           ++ V+
Sbjct: 452 LSVVI 456


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.142    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 590,502
Number of extensions: 24516
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 3
Length of query: 191
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 111
Effective length of database: 1,241,070
Effective search space: 137758770
Effective search space used: 137758770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)