BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0102.p
         (266 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309811|ref|YP_003773903.1| 1-acyl-sn-glycerol-3-phosphate ...   514   e-147
gi|300311697|ref|YP_003775789.1| acyltransferase family protein ...    58   8e-10

>gi|300309811|ref|YP_003773903.1| 1-acyl-sn-glycerol-3-phosphate
           acyltransferase transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 266

 Score =  514 bits (1324), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 249/266 (93%), Positives = 260/266 (97%)

Query: 1   MFVFRLLRLIAHLFKGMAVCAFLFPFTSEKGREAHIRRWSRKLLRICGIAIKIDSPLPIP 60
           MFVFRLLRLIAHLFKGMAVCAFLFPFTS++GREAHIRRWSRKLLRICGIAI+IDSPLPIP
Sbjct: 1   MFVFRLLRLIAHLFKGMAVCAFLFPFTSQQGREAHIRRWSRKLLRICGIAIRIDSPLPIP 60

Query: 61  RSLLVSNHVSWLDIFVVNSLQPCRFVAKSEIRSWPLIGWLCAKTGTIFISRGKASDVRRI 120
           RSLLVSNHVSWLDIF VNSLQPCRFVAKSEIRSWPLIGWLCAKTGTIFISRGKASDVRRI
Sbjct: 61  RSLLVSNHVSWLDIFAVNSLQPCRFVAKSEIRSWPLIGWLCAKTGTIFISRGKASDVRRI 120

Query: 121 FKGLVESIEKDEHVAFFPEGTTAAQGTLLPFHANLFEAAIDAKAPVQPYALRYVDGEGRL 180
           FKGLVESIEKDEHVAFFPEGTTAAQGTLLPFHANLFEAAIDAKAPVQPYALRYVD  G+L
Sbjct: 121 FKGLVESIEKDEHVAFFPEGTTAAQGTLLPFHANLFEAAIDAKAPVQPYALRYVDANGQL 180

Query: 181 HAAADFIGDMSIAESIMSILKSKGMTAELKQLPLISTEGAHRRDLARTAREVIATGLGYS 240
           HAAADFIG+MSIAESI++ILK++GMTAELKQLPLISTEGAHRRDLAR+AREVIATGLGYS
Sbjct: 181 HAAADFIGEMSIAESILTILKARGMTAELKQLPLISTEGAHRRDLARSAREVIATGLGYS 240

Query: 241 LESLSPAAAPADTAPGTAPDPQVAPH 266
           L SL+PA APADTAP TAPDPQVAPH
Sbjct: 241 LASLNPAGAPADTAPETAPDPQVAPH 266


>gi|300311697|ref|YP_003775789.1| acyltransferase family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 932

 Score = 57.8 bits (138), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 8/140 (5%)

Query: 40  SRKLLRICGIAIKI--DSPLPIPRSLLVSNHVSWLDIFVVNSLQP-----CRFVAKSEIR 92
           S+ L+R+  + + I     LP    +LV NH S+LD  ++ +  P     C   AK E+ 
Sbjct: 736 SQLLVRLLALQVSIAGTDHLPSGPHVLVVNHSSYLDSLILLAALPPVPGYC-LAAKRELE 794

Query: 93  SWPLIGWLCAKTGTIFISRGKASDVRRIFKGLVESIEKDEHVAFFPEGTTAAQGTLLPFH 152
           +  +I       G +F+ R   S  R     +VE++++ E++  FPEGT      L  FH
Sbjct: 795 AHWIIRRFLRGLGVLFVDRSDISQSRTEVDSMVEALKRGENILVFPEGTFTRNAGLNAFH 854

Query: 153 ANLFEAAIDAKAPVQPYALR 172
              F AA  A  P+    LR
Sbjct: 855 FGAFMAASKANVPLVVAGLR 874


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.137    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 728,619
Number of extensions: 27661
Number of successful extensions: 113
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 3
Length of query: 266
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 182
Effective length of database: 1,222,130
Effective search space: 222427660
Effective search space used: 222427660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 130 (54.7 bits)