BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0101.p
         (450 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309810|ref|YP_003773902.1| dihydroorotase [Herbaspirillum ...   862   0.0  

>gi|300309810|ref|YP_003773902.1| dihydroorotase [Herbaspirillum
           seropedicae SmR1]
          Length = 428

 Score =  862 bits (2228), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/428 (98%), Positives = 427/428 (99%)

Query: 23  MKLHIKNGRLIDPANGIDAQQDVYVAAGKIVGVGQAPADFVANKTIDATGLIVAPGLVDL 82
           MKLHIKNGRLIDPANGIDAQQDVYVAAGKIVGVGQAPADFVANKTIDATGL+VAPGLVDL
Sbjct: 1   MKLHIKNGRLIDPANGIDAQQDVYVAAGKIVGVGQAPADFVANKTIDATGLVVAPGLVDL 60

Query: 83  SARLREPGYEYKATLESEMQAAIQGGVTSLVCPPDTDPVLDEPGLVEMLKHRARSLNQAH 142
           SARLREPGYEYKATLESEMQAAIQGGVTSLVCPPDTDPVLDEPGLVEMLKHRARSLNQAH
Sbjct: 61  SARLREPGYEYKATLESEMQAAIQGGVTSLVCPPDTDPVLDEPGLVEMLKHRARSLNQAH 120

Query: 143 VYPLGALTAGLKGKALTEMAELTEAGCIGFSQAEEPITDTTVLLSALQYAKTFNYTVWLR 202
           VYPLGALTAGLKGKALTEMAELT+AGCIGFSQAEEPITDTTVLLSALQYAKTFNYTVWLR
Sbjct: 121 VYPLGALTAGLKGKALTEMAELTDAGCIGFSQAEEPITDTTVLLSALQYAKTFNYTVWLR 180

Query: 203 PQDPHLGRTGIAHSGPAASRLGLSGVPVMSETIALYTLFELMRATGARVHLCRMSSAAGL 262
           PQDPHLGR+GIAHSGPAASRLGLSGVPVMSETIALYTLFELMRATGARVHLCRMSSAAGL
Sbjct: 181 PQDPHLGRSGIAHSGPAASRLGLSGVPVMSETIALYTLFELMRATGARVHLCRMSSAAGL 240

Query: 263 ELVRQAKSEGLPVTCDVGVHHIHLCDLDIGFFDSNARMTPPLRSQRDREAIRTALLDGTI 322
           ELVRQAKSEGLPVTCDVGVHHIHLCDLDIGFFDSNARMTPPLRSQRDREAIRTALLDGTI
Sbjct: 241 ELVRQAKSEGLPVTCDVGVHHIHLCDLDIGFFDSNARMTPPLRSQRDREAIRTALLDGTI 300

Query: 323 DAVCSDHTPVDDDEKLLPFGEASPGATGLELLLSLSLKWALETEGEGKEVLSKAISKVTH 382
           DAVCSDHTPVDDDEKLLPFGEASPGATGLELLLSLSLKWALETEGEGKEVLSKAISKVTH
Sbjct: 301 DAVCSDHTPVDDDEKLLPFGEASPGATGLELLLSLSLKWALETEGEGKEVLSKAISKVTH 360

Query: 383 RAAKVAGLKAGNLAVGSVADLCLFDPNTLWKVQGSALASQGKHTPFLGYELPGVVKATIV 442
           RAAKVAGLKAGNLAVGSVADLCLFDPN +WKVQG+ALASQGKHTPFLGYELPGVVKATIV
Sbjct: 361 RAAKVAGLKAGNLAVGSVADLCLFDPNAMWKVQGAALASQGKHTPFLGYELPGVVKATIV 420

Query: 443 SGHIAFER 450
           SGHIAFER
Sbjct: 421 SGHIAFER 428


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,412,528
Number of extensions: 58178
Number of successful extensions: 213
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 362
Effective length of database: 1,203,190
Effective search space: 435554780
Effective search space used: 435554780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)