BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0098.p
         (128 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309806|ref|YP_003773898.1| Holliday junction resolvase [He...   256   3e-70

>gi|300309806|ref|YP_003773898.1| Holliday junction resolvase
           [Herbaspirillum seropedicae SmR1]
          Length = 128

 Score =  256 bits (655), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 123/128 (96%), Positives = 126/128 (98%)

Query: 1   LETILAFDFGLKRIGVAVGNTGLKQAQPLAVISEATNDGKFAAIARLIAEWQPARCVVGL 60
           ++TILAFDFGLKRIGVAVGNTGLKQAQPLAVISEATNDGKFAAIARLI EWQPARCVVGL
Sbjct: 1   MDTILAFDFGLKRIGVAVGNTGLKQAQPLAVISEATNDGKFAAIARLIQEWQPARCVVGL 60

Query: 61  PLHPDGAEHEMSVRCRRFANQLHGRYGLEVTLVDERYSSAVIQHQRGEQIDDQAAAIILQ 120
           PLHPDGAEHEMSVRCRRFANQLHGRYG+EV LVDERYSSAVIQHQRGEQIDDQAAAIILQ
Sbjct: 61  PLHPDGAEHEMSVRCRRFANQLHGRYGVEVVLVDERYSSAVIQHQRGEQIDDQAAAIILQ 120

Query: 121 QYFDDAHS 128
           QYFDDAHS
Sbjct: 121 QYFDDAHS 128


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 431,664
Number of extensions: 17240
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 1
Length of query: 128
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 53
Effective length of database: 1,264,745
Effective search space: 67031485
Effective search space used: 67031485
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)