BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0093.p
         (105 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309802|ref|YP_003773894.1| nitrate/sulfonate/bicarbonate A...   213   3e-57
gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A...    76   7e-16
gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ...    74   2e-15
gi|300313547|ref|YP_003777639.1| nitrate/sulfonate/bicarbonate A...    72   1e-14
gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Her...    69   1e-13

>gi|300309802|ref|YP_003773894.1| nitrate/sulfonate/bicarbonate ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 278

 Score =  213 bits (541), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 100/105 (95%), Positives = 103/105 (98%)

Query: 1   MDEPFGALDEFTRNKLDADLRDIWSKQDLTVVFVTHSIYEAVFLSSRVIVMAARPGRVIA 60
           MDEPFGALDEFTRNKLDADLRDIWS+QDLTVVFVTHSIYEAVFLSSRVIVMAARPGRVIA
Sbjct: 174 MDEPFGALDEFTRNKLDADLRDIWSRQDLTVVFVTHSIYEAVFLSSRVIVMAARPGRVIA 233

Query: 61  DVAIEVDGPRDEAFRISAPFMQYCKTLSDYLTLANQQGDGHEAQH 105
           DVAI+  GPRDEAFR+SAPFMQYCKTLSDYLTLANQQGDGHEAQH
Sbjct: 234 DVAIDAPGPRDEAFRMSAPFMQYCKTLSDYLTLANQQGDGHEAQH 278


>gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 269

 Score = 75.9 bits (185), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 48/73 (65%)

Query: 1   MDEPFGALDEFTRNKLDADLRDIWSKQDLTVVFVTHSIYEAVFLSSRVIVMAARPGRVIA 60
           MDEPFGALD  TR  L  +L  IW +   T+VFVTHSI EA++L+ R++VM  RPG V  
Sbjct: 164 MDEPFGALDALTRRNLQDELLRIWDEFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKR 223

Query: 61  DVAIEVDGPRDEA 73
           D+ + +   RD A
Sbjct: 224 DMLVNLPRLRDPA 236


>gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 261

 Score = 74.3 bits (181), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 43/60 (71%)

Query: 1   MDEPFGALDEFTRNKLDADLRDIWSKQDLTVVFVTHSIYEAVFLSSRVIVMAARPGRVIA 60
           MDEPFGALD  TR ++   L  +W++    V F+THSI EA+FL + VIVM+ RPGR++A
Sbjct: 157 MDEPFGALDSMTREQMQELLVSVWARTGKQVFFITHSIEEALFLGTEVIVMSPRPGRIVA 216


>gi|300313547|ref|YP_003777639.1| nitrate/sulfonate/bicarbonate ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 261

 Score = 72.0 bits (175), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 43/59 (72%)

Query: 1   MDEPFGALDEFTRNKLDADLRDIWSKQDLTVVFVTHSIYEAVFLSSRVIVMAARPGRVI 59
           +DEPFGALD FTR +L   LRD+W+++   V+ VTH + EA FL+  + VM+ RPGR++
Sbjct: 165 LDEPFGALDAFTREELWCVLRDLWAERRFNVILVTHDLREAAFLADTIYVMSKRPGRIV 223


>gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 272

 Score = 68.6 bits (166), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 53/93 (56%), Gaps = 2/93 (2%)

Query: 1   MDEPFGALDEFTRNKLDADLRDIWSKQDLTVVFVTHSIYEAVFLSSRVIVMAARPGRVIA 60
           MDEPFGALD  TR  L  +L  I +K D TVV VTH + EAV LS R+++M   P   I 
Sbjct: 168 MDEPFGALDALTRAHLQDELLKIVAKTDSTVVMVTHDVDEAVLLSDRIVMMTNGPAATIG 227

Query: 61  DV-AIEVDGPRDEAFRISAP-FMQYCKTLSDYL 91
           +V  +++  PRD       P + QY   + ++L
Sbjct: 228 EVLEVKLARPRDRVVLAQDPEYGQYRTAVLEFL 260


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 318,568
Number of extensions: 10536
Number of successful extensions: 88
Number of sequences better than 1.0e-08: 12
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 12
Length of query: 105
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 33
Effective length of database: 1,278,950
Effective search space: 42205350
Effective search space used: 42205350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 123 (52.0 bits)