BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0092.p (200 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309802|ref|YP_003773894.1| nitrate/sulfonate/bicarbonate A... 221 5e-59 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 89 2e-19 gi|300310414|ref|YP_003774506.1| spermidine/putrescine ABC trans... 89 2e-19 gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 87 1e-18 gi|300309616|ref|YP_003773708.1| maltose/maltodextrin ABC transp... 83 2e-17 >gi|300309802|ref|YP_003773894.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 278 Score = 221 bits (562), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 104/111 (93%), Positives = 106/111 (95%) Query: 30 PVLSAQRVEKTYRNGTRALDEVKLDIGRGEFVSLLGPSGCGKSTLLKMFAGLEEPSHGHI 89 PVLSAQRVEKTYRNGT ALDEV+LDIGRGEFVSLLGPSGCGKSTLLKMFAGLEEPSHGHI Sbjct: 18 PVLSAQRVEKTYRNGTHALDEVRLDIGRGEFVSLLGPSGCGKSTLLKMFAGLEEPSHGHI 77 Query: 90 RWWGGNLATVGTPERTLAMVFQEATLMPWATVEQNARLPLELRHVPRRGVD 140 RWWGGNLATVGTPERTLAMVFQEATLMPWATVEQN RLPL+LRHVPR D Sbjct: 78 RWWGGNLATVGTPERTLAMVFQEATLMPWATVEQNVRLPLDLRHVPRAQAD 128 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 89.4 bits (220), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 52/113 (46%), Positives = 65/113 (57%), Gaps = 6/113 (5%) Query: 27 DAPPVLSAQRVEKTYRNGTR---ALDEVKLDIGRGEFVSLLGPSGCGKSTLLKMFAGLEE 83 +A P + Q V K ++ R AL ++ LDI G+FV LLGPSGCGKSTLL AG Sbjct: 5 NASPRIRIQGVHKVFKTDDREVVALKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFAL 64 Query: 84 PSHGHIRWWGGNLATVGTPERTLAMVFQEATLMPWATVEQNARLPLELRHVPR 136 PS G I ++ G P+R MVFQE L PW TVEQN LE++ P+ Sbjct: 65 PSSGQILTDDKVVSEPG-PDR--GMVFQEYALFPWMTVEQNVAFGLEIKGTPK 114 >gi|300310414|ref|YP_003774506.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 376 Score = 89.4 bits (220), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 46/100 (46%), Positives = 58/100 (58%) Query: 37 VEKTYRNGTRALDEVKLDIGRGEFVSLLGPSGCGKSTLLKMFAGLEEPSHGHIRWWGGNL 96 V+KTY + + LDI RGEF++LLGPSG GK+T L M AG E P+ G IR G L Sbjct: 27 VKKTYDGENLIVKNLDLDIRRGEFLTLLGPSGSGKTTCLMMLAGFEFPTGGEIRLDGQLL 86 Query: 97 ATVGTPERTLAMVFQEATLMPWATVEQNARLPLELRHVPR 136 V +R + MVFQ L P T+ QN PL +R + R Sbjct: 87 NRVPPHKRNIGMVFQNYALFPHMTIAQNVAYPLSVRKMDR 126 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 86.7 bits (213), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 47/109 (43%), Positives = 66/109 (60%), Gaps = 3/109 (2%) Query: 35 QRVEKTYRNGTRALDEV---KLDIGRGEFVSLLGPSGCGKSTLLKMFAGLEEPSHGHIRW 91 ++V KTY GT+A+D + +I GEF+ ++GPSGCGKSTLL+M AGLEE S G I Sbjct: 7 KQVRKTYGAGTKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEISSGQIVI 66 Query: 92 WGGNLATVGTPERTLAMVFQEATLMPWATVEQNARLPLELRHVPRRGVD 140 + + ER +AMVFQ L P TV QN L+++ + + +D Sbjct: 67 GDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEID 115 >gi|300309616|ref|YP_003773708.1| maltose/maltodextrin ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 381 Score = 82.8 bits (203), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/121 (41%), Positives = 65/121 (53%), Gaps = 16/121 (13%) Query: 20 AAVAALPDAPPVLSAQRVEKTYRNGTRALDEVKLDIGRGEFVSLLGPSGCGKSTLLKMFA 79 AA A DAPPV+ RN V LDIG EF LGPSGCGKSTLL+ A Sbjct: 8 AAQKAYGDAPPVI---------RN-------VDLDIGEHEFCVFLGPSGCGKSTLLRSIA 51 Query: 80 GLEEPSHGHIRWWGGNLATVGTPERTLAMVFQEATLMPWATVEQNARLPLELRHVPRRGV 139 GLE+ + G + G + V + +R++AMVFQ L P TV +N L L +P+ + Sbjct: 52 GLEDLTSGDLFIGGKRVNDVPSAQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEI 111 Query: 140 D 140 + Sbjct: 112 E 112 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.134 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 560,980 Number of extensions: 22059 Number of successful extensions: 294 Number of sequences better than 1.0e-08: 50 Number of HSP's gapped: 277 Number of HSP's successfully gapped: 50 Length of query: 200 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 119 Effective length of database: 1,236,335 Effective search space: 147123865 Effective search space used: 147123865 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)