BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0090.p
         (328 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309800|ref|YP_003773892.1| isopenicillin N synthase [Herba...   618   e-178

>gi|300309800|ref|YP_003773892.1| isopenicillin N synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 328

 Score =  618 bits (1593), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 299/328 (91%), Positives = 308/328 (93%)

Query: 1   MIPYTVPMTARRIPVIDFADAFSPELARREALAWEIHKISRDVGFFYLVNHGVAPSLVEQ 60
           MIPYT PMTARRIPVIDFADAFSPELARREALAWEIHKISRDVGFFYLVNHGV  +L++ 
Sbjct: 1   MIPYTPPMTARRIPVIDFADAFSPELARREALAWEIHKISRDVGFFYLVNHGVPQALIDG 60

Query: 61  QFDWARRFFALPQASKSAIDMRHSPSGYGYERMGAQALDEGSPADLKEGFQFGFDIAPDH 120
           QFDWARRFFALPQASKSAIDMRHS SGYGYERMGAQALDEGSPADLKEGFQFGFDIAPDH
Sbjct: 61  QFDWARRFFALPQASKSAIDMRHSASGYGYERMGAQALDEGSPADLKEGFQFGFDIAPDH 120

Query: 121 PYVQRGLLRYGHHLWPQDLPGFEEHSRLYYDAVRDLSHRLLGVIALSLEMPEDFFEPVLQ 180
           PYV RGLLRYGH+LWPQDLPGFE HSR YY+AVR LSHRLLGVIALSLEMPEDFF PVL 
Sbjct: 121 PYVLRGLLRYGHNLWPQDLPGFETHSRQYYEAVRALSHRLLGVIALSLEMPEDFFTPVLH 180

Query: 181 APIATQRMLHYPPQPDVARHNQIGAGAHTDWGLVTILAQDDIGGLEICNADGQWVSAPPI 240
            PIATQRMLHYPPQP  A+HNQIGAGAHTDWGLVTILAQD IGGLEICNA+G WVSAPPI
Sbjct: 181 TPIATQRMLHYPPQPASAQHNQIGAGAHTDWGLVTILAQDAIGGLEICNAEGDWVSAPPI 240

Query: 241 AESFVVNIGDLLQRWSNDLYHSNAHRVLNAGSAPRYSLPFFQDGDQAAVVACLPSCCSDE 300
           A SFVVNIGDLLQRWSNDLYHSNAHRV N G+APRYSLPFFQDGDQAAVVACLP+CCS E
Sbjct: 241 AGSFVVNIGDLLQRWSNDLYHSNAHRVCNVGNAPRYSLPFFQDGDQAAVVACLPTCCSAE 300

Query: 301 RPARYAPCTIGDYLEMKVKQTFGAVAAA 328
           RPARYAPCTIGDYLEMKVKQTFGAVAAA
Sbjct: 301 RPARYAPCTIGDYLEMKVKQTFGAVAAA 328


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.139    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,205,664
Number of extensions: 56074
Number of successful extensions: 123
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 242
Effective length of database: 1,212,660
Effective search space: 293463720
Effective search space used: 293463720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)