BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0089.p
         (334 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309799|ref|YP_003773891.1| nitrate/sulfonate/bicarbonate A...   627   0.0  

>gi|300309799|ref|YP_003773891.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 329

 Score =  627 bits (1616), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/329 (95%), Positives = 323/329 (98%)

Query: 6   MQKRTFLRHLAALWLGAAALSVTGLAHAEDKVTLLSNWYAQAEHGGFYQAVAKGIYKKYG 65
           MQKR FLR  AALWLGAAALS+TGLA A+DKVTLLSNWYAQAEHGGFYQAVAKGIYKKYG
Sbjct: 1   MQKRRFLRCAAALWLGAAALSITGLAQAQDKVTLLSNWYAQAEHGGFYQAVAKGIYKKYG 60

Query: 66  MDVTIKMGGPQVNNMQILVAGQADFSMGYDFAVMKGIEQGLPLVTVGTSFQSDLQGMMTH 125
           MDVTIKMGGPQVNNMQILVAGQADFSMGYDF VMKG+EQGLPLVTVGTSFQSDLQGMMTH
Sbjct: 61  MDVTIKMGGPQVNNMQILVAGQADFSMGYDFTVMKGVEQGLPLVTVGTSFQSDLQGMMTH 120

Query: 126 DDVSSLGGLKSKTILVAGSGQSSWWPWLKSKYGYTDAQSKAYTFNLQPFFADPNIAQQAY 185
           DDV+SLGGLK+KTILVAGSGQSSWWPWLK+KYGYTDAQS+AYTFNLQPFFADPNIAQQAY
Sbjct: 121 DDVASLGGLKNKTILVAGSGQSSWWPWLKAKYGYTDAQSRAYTFNLQPFFADPNIAQQAY 180

Query: 186 PSSELFQADKAGVKSKFFLFASEGYPPYGTTIVTLQKTVATKPDLVQRFVKATAEGWKSY 245
           PSSELFQADKAGVKSKFFLFASEGYPPYGTTIVTLQKTVATKPDLVQRFVKATAEGWKSY
Sbjct: 181 PSSELFQADKAGVKSKFFLFASEGYPPYGTTIVTLQKTVATKPDLVQRFVKATAEGWKSY 240

Query: 246 LEDPAPANALIKADNKNMGDEQLAYALGKLKELKVVTGGDAAKLGIGVMTDERWKQTYDV 305
           LEDPAP NALIKADNKNMGDEQLAYALGKLKELKVVTGGDAA+LGIGVMTDERWKQTY+V
Sbjct: 241 LEDPAPGNALIKADNKNMGDEQLAYALGKLKELKVVTGGDAARLGIGVMTDERWKQTYEV 300

Query: 306 MVATGLLKAGTDYHKAYTTQFVKDMKVMP 334
           MVATGLLKAGTDYHKAYTTQFVKDMKVMP
Sbjct: 301 MVATGLLKAGTDYHKAYTTQFVKDMKVMP 329


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.131    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,002,923
Number of extensions: 41550
Number of successful extensions: 129
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 248
Effective length of database: 1,212,660
Effective search space: 300739680
Effective search space used: 300739680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)