BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0085.p (522 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis pro... 704 0.0 gi|300313925|ref|YP_003778017.1| methyl-accepting chemotaxis sen... 284 1e-77 gi|300309873|ref|YP_003773965.1| methyl-accepting chemotaxis tra... 262 6e-71 gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis tra... 261 1e-70 gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis tra... 248 8e-67 >gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/396 (90%), Positives = 381/396 (96%), Gaps = 1/396 (0%) Query: 1 MKSGMKVGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFTHVVEVKNPESALVKEMLET 60 MKSGMK+GTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFTHVVEVKNPESALVKEMLET Sbjct: 1 MKSGMKMGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFTHVVEVKNPESALVKEMLET 60 Query: 61 VGERSISLRNLMLPAAPEDVDIEAQYIEGQTQKYKVAAQKLQQLFADSSDTSEEEKAALP 120 VGERSISLRNLMLPAAPEDVDIEAQYIE Q+ KYK+AAQKLQQLFA+SSDTS+EEKAALP Sbjct: 61 VGERSISLRNLMLPAAPEDVDIEAQYIEAQSLKYKMAAQKLQQLFAESSDTSDEEKAALP 120 Query: 121 KIQAQAAAAEKLINEAVEFGKRREAYELAQFLKEQYLPVQKSWQVELKALAALEDKLNRE 180 KI AQA+ AEKLINEAVEFGKRREAYELAQFLKEQYLPVQKSWQVELKALAALED+LN+E Sbjct: 121 KIAAQASKAEKLINEAVEFGKRREAYELAQFLKEQYLPVQKSWQVELKALAALEDQLNKE 180 Query: 181 AADSSAAAYARARLLMLLISAIGVVTAILAAIWITRQILRKLGGEPDYAVQIAGQIAEGD 240 AA++SA AY+RAR+LMLLISAIGVVTA+LAA W+TR +LRKLGGEPDYAVQIAGQIAEGD Sbjct: 181 AAEASAVAYSRARMLMLLISAIGVVTAVLAAFWLTRHLLRKLGGEPDYAVQIAGQIAEGD 240 Query: 241 LAVVIDTRAGDNDSLLAAMRVMRDKLAAIVTEVRRGSETITTASTEIARGNLDLSGRTEQ 300 LAVVIDTRAGD+DSL+AAMRVMRDKLAAIV EVR+GSETITTAS+EIARGNLDLSGRTEQ Sbjct: 241 LAVVIDTRAGDHDSLMAAMRVMRDKLAAIVAEVRKGSETITTASSEIARGNLDLSGRTEQ 300 Query: 301 QAGALEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVETMQSINAS 360 QAGALEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVV+TMQSINAS Sbjct: 301 QAGALEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVQTMQSINAS 360 Query: 361 SQKVADIVSVIDGIAFQTNILA-GAALGLGRQGNQG 395 SQKVADIVSVIDGIAFQTNILA AA+ R G QG Sbjct: 361 SQKVADIVSVIDGIAFQTNILALNAAVEAARAGEQG 396 >gi|300313925|ref|YP_003778017.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 522 Score = 284 bits (727), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 165/392 (42%), Positives = 240/392 (61%), Gaps = 1/392 (0%) Query: 5 MKVGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFTHVVEVKNPESALVKEMLETVGER 64 + V +RL GF V+ L++L+ G + + +V + + EV N E + M E+ Sbjct: 6 LTVSSRLKFGFGVVLFLILLIVGIALKKLAEVNRQLVSITEVNNVEIYHLSTMRAAAYEQ 65 Query: 65 SISLRNLMLPAAPEDVDIEAQYIEGQTQKYKVAAQKLQQLFADSSDTSEEEKAALPKIQA 124 S++ R + L PED++ A ++ Q Y + L +LFAD +T++ EK AL IQ Sbjct: 66 SLASRGIGLALTPEDLNQNANNLQRQIGLYTQSEAALAKLFADLQETTDTEKQALAAIQK 125 Query: 125 QAAAAEKLINEAVEFGKRREAYELAQFLKEQYLPVQKSWQVELKALAALEDKLNREAADS 184 +A ++ ++ K ++ EL + +Q + L L+A EDKLN EA D Sbjct: 126 MSAGLSPGLSNMIDLAKAQKTEELKPIMTGPLGKMQADRRKALAELSAFEDKLNNEAKDE 185 Query: 185 SAAAYARARLLMLLISAIGVVTAILAAIWITRQILRKLGGEPDYAVQIAGQIAEGDLAVV 244 + A A AR L++ + I ++ ++AA+ ITR +LR+LGGEP YA ++A QIA+GDL Sbjct: 186 ALAVSASARKLLIALGVIALLCGLMAAVLITRSVLRQLGGEPAYASRLAAQIAKGDLRTE 245 Query: 245 IDTRAGDNDSLLAAMRVMRDKLAAIVTEVRRGSETITTASTEIARGNLDLSGRTEQQAGA 304 + +SL+ +M+ M + L IV EVR G++ I TAS++IA GNLDLS RTE+QA + Sbjct: 246 VKADTRHPESLMMSMKTMNEGLRGIVREVRSGTDAIATASSQIASGNLDLSSRTEEQASS 305 Query: 305 LEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVETMQSINASSQKV 364 LEETAS+MEQL +TVKQNA++A +AN LA AS VA Q G +V +VV TM +I SS+K+ Sbjct: 306 LEETASAMEQLTATVKQNADSAGEANRLAAEASAVASQSGQLVKEVVTTMAAIEDSSKKI 365 Query: 365 ADIVSVIDGIAFQTNILA-GAALGLGRQGNQG 395 DI+SVIDGI+FQTNILA AA+ R G QG Sbjct: 366 VDIISVIDGISFQTNILALNAAVEAARAGEQG 397 >gi|300309873|ref|YP_003773965.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 547 Score = 262 bits (669), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 155/392 (39%), Positives = 237/392 (60%), Gaps = 1/392 (0%) Query: 5 MKVGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFTHVVEVKNPESALVKEMLETVGER 64 +KV TRL LGF +++ L+ ++ G++ M +V T + +V N E LV + + +R Sbjct: 4 LKVVTRLALGFGLILVFLLSISALGLYGMARVNDALTDITDVNNAEIKLVTALRNALSQR 63 Query: 65 SISLRNLMLPAAPEDVDIEAQYIEGQTQKYKVAAQKLQQLFADSSDTSEEEKAALPKIQA 124 ++++RN+ L D+ +E+Q + Q + Y A L ++F + T+E E+ L +I+ Sbjct: 64 ALAIRNIALLDEQADMQVESQTLARQEKLYADAYAALDKMFTTEAATTERERQLLVQIKN 123 Query: 125 QAAAAEKLINEAVEFGKRREAYELAQFLKEQYLPVQKSWQVELKALAALEDKLNREAADS 184 AA L+ +AV+ G +A E + L Q P Q++W L LA ED+LN EAA S Sbjct: 124 DEAATLPLMAKAVQLGLENKAAEAGKMLITQVRPKQQAWIKSLTELAEFEDQLNDEAATS 183 Query: 185 SAAAYARARLLMLLISAIGVVTAILAAIWITRQILRKLGGEPDYAVQIAGQIAEGDLAVV 244 + YA R++ + + ++ + A+ I R ILR+LG EP A +A IA GDL Sbjct: 184 ARNTYAWLRMVTVAAALAALLVGVAASALIARSILRQLGAEPSEAQAVARDIASGDLTAT 243 Query: 245 IDTRAGDNDSLLAAMRVMRDKLAAIVTEVRRGSETITTASTEIARGNLDLSGRTEQQAGA 304 + R GD+ SL+A++ MR +L I ++ +ETI+ AS +IA+GN DLS RTE+QA + Sbjct: 244 VRVREGDSSSLMASIEQMRYQLNVIAHGIKSAAETISVASGQIAQGNFDLSQRTEEQAAS 303 Query: 305 LEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVETMQSINASSQKV 364 LEETA+SME+L +TV+QN ++A +A L+ A++ A G +VV+TM I ASS K+ Sbjct: 304 LEETAASMEELTTTVRQNTQHASEALRLSGGATETAAAGSQAFDRVVQTMDRITASSSKM 363 Query: 365 ADIVSVIDGIAFQTNILA-GAALGLGRQGNQG 395 +DI+SVI+GIAFQTNILA AA+ R G QG Sbjct: 364 SDIISVIEGIAFQTNILALNAAVEAARAGEQG 395 >gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 261 bits (667), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 172/397 (43%), Positives = 246/397 (61%), Gaps = 11/397 (2%) Query: 1 MKSGMKVGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFTHVVEVKNPESALVKEMLET 60 M MK+GT+L LGF +V+L +LV+G + ++ + V+ V++ + A + E Sbjct: 1 MFKHMKIGTKLALGFGALVVLTILVSGISLSSIRALTSSIKAVLAVQDQKLAPLYAAREA 60 Query: 61 VGERSISLRNLMLPAAPEDVDIEAQYIEGQTQKYKVAAQKLQQLFADSSDTSEEEKAALP 120 + + I+ RN + + D E ++ Q Q Y A + L LFA + E EK Sbjct: 61 LDQTGIAARNAYVFRSDADAQKELAIVDEQKQLYLKAIKDLGPLFAGNK---EFEKVRSG 117 Query: 121 KIQ-AQAAAAEKLINEAVEFGKRREAYELAQFLKEQYLPVQKSWQVELKALAALEDKLNR 179 +Q A+ +L E+ R E Y FL + P+++ ++ + A + N Sbjct: 118 MLQMAEELKRPRLYRES----GRSEEYR--DFLVNECSPLRRQIVSDIGTVLAQVEAENN 171 Query: 180 EAADSSAAAYARARLLMLLISAIGVVTAILAAIWITRQILRKLGGEPDYAVQIAGQIAEG 239 A D++ A L + +++ + VV +IL A+ +TR +L++LGGEP YA QIA QIA+G Sbjct: 172 RAQDATDKMAQLAALTVAVLTLVVVVISILIAVLLTRGLLKQLGGEPTYAAQIAQQIADG 231 Query: 240 DLAVVIDTRAGDNDSLLAAMRVMRDKLAAIVTEVRRGSETITTASTEIARGNLDLSGRTE 299 DL + T+ GDN SLL A++ MRD L +IV +VR+G+ TI AS+EIA GNLDLS RTE Sbjct: 232 DLTANVQTKTGDNSSLLFAIKNMRDSLVSIVAQVRQGTFTIEQASSEIASGNLDLSSRTE 291 Query: 300 QQAGALEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVETMQSINA 359 QQA +LEETAS+ME+L +TVKQNA+NA QA+ LA++AS+VA QGG +V+QVV TM INA Sbjct: 292 QQASSLEETASAMEELMTTVKQNADNAKQASQLAVSASEVASQGGEVVAQVVTTMDGINA 351 Query: 360 SSQKVADIVSVIDGIAFQTNILA-GAALGLGRQGNQG 395 SS+K+ DI+SVIDGIAFQTNILA AA+ R G QG Sbjct: 352 SSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQG 388 >gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 248 bits (633), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 162/392 (41%), Positives = 243/392 (61%), Gaps = 3/392 (0%) Query: 5 MKVGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFTHVVEVKNPESALVKEMLETVGER 64 +KV TRL LGFA VV+LLV+++ G++ M V+G + +V N + L M +V R Sbjct: 4 LKVSTRLALGFASVVVLLVVISLVGLWGMATVKGNLSDIV-ANNQQGGLADVMNNSVRIR 62 Query: 65 SISLRNLMLPAAPEDVDIEAQYIEGQTQKYKVAAQKLQQLFADSSDTSEEEKAALPKIQA 124 ++++RN+ L P + E + I+ Q + Y+ A +KL ++F D DT+ E I Sbjct: 63 ALAIRNIALFQEPALIAREIERIKVQEKAYQDAREKLGKMF-DQPDTTRREHELFDLIAQ 121 Query: 125 QAAAAEKLINEAVEFGKRREAYELAQFLKEQYLPVQKSWQVELKALAALEDKLNREAADS 184 AA E L+N+AV ++ ++ EL L ++ PVQ W L L ED+LN +A+ + Sbjct: 122 NAADTEPLMNQAVTLAQQDKSAELISLLTQKIRPVQAKWLDNLDELGRFEDELNNQASAA 181 Query: 185 SAAAYARARLLMLLISAIGVVTAILAAIWITRQILRKLGGEPDYAVQIAGQIAEGDLAVV 244 + Y + A V+ A+ AA I R +L +LGGEP A ++A QIA+G+LAV Sbjct: 182 ADTTYRSILTTTWTLVAGSVLLAVAAAFLIVRSVLHQLGGEPAQAQELAAQIAQGNLAVS 241 Query: 245 IDTRAGDNDSLLAAMRVMRDKLAAIVTEVRRGSETITTASTEIARGNLDLSGRTEQQAGA 304 I GD SL+A++ MR +L IV ++ +E+I+TA+++IA GNLDLS RTE+QA + Sbjct: 242 IPLAKGDQHSLMASLENMRAQLTRIVDGIKHSAESISTAASQIAVGNLDLSRRTEEQAAS 301 Query: 305 LEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVETMQSINASSQKV 364 LEETASSME++ STV+QN +NA Q + LA +AS A +GG +V +VV TM+ I+ S+ K+ Sbjct: 302 LEETASSMEEITSTVEQNTQNAGQGHQLARSASLHAQKGGEVVERVVGTMKDISQSAYKI 361 Query: 365 ADIVSVIDGIAFQTNILA-GAALGLGRQGNQG 395 +I++ ++GIAFQTNILA AA+ R G QG Sbjct: 362 TEIIATVEGIAFQTNILALNAAVEAARAGEQG 393 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.129 0.353 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,219,267 Number of extensions: 40908 Number of successful extensions: 518 Number of sequences better than 1.0e-08: 65 Number of HSP's gapped: 439 Number of HSP's successfully gapped: 65 Length of query: 522 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 432 Effective length of database: 1,193,720 Effective search space: 515687040 Effective search space used: 515687040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)