BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0081.p
         (231 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309793|ref|YP_003773885.1| hypothetical protein Hsero_0452...   226   9e-61
gi|300312436|ref|YP_003776528.1| hypothetical protein Hsero_3136...    94   6e-21
gi|300309912|ref|YP_003774004.1| hypothetical protein Hsero_0577...    65   4e-12

>gi|300309793|ref|YP_003773885.1| hypothetical protein Hsero_0452
           [Herbaspirillum seropedicae SmR1]
          Length = 230

 Score =  226 bits (577), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 118/232 (50%), Positives = 148/232 (63%), Gaps = 3/232 (1%)

Query: 1   MPVARAYFTQLFLGTLYAALFLCLIPMATGAAMLFLPAPQWQPWHPDRWQDSLHAHRETL 60
           MPVA+AY TQLFL TLY       I  A     L +PA   Q      W D   +    L
Sbjct: 1   MPVAKAYLTQLFLSTLYMLALFGSIMAAVLTLPLVVPASLEQQLGVQPWMDQAASEPGEL 60

Query: 61  YWLAALLMAATLAWFCWGMGRVIGQAQPRWQPAYWTTTLLYMLVMSYGVAIAVVTSTRPH 120
           Y +   ++A  L  F   M RV+  A+   +  Y T TLLYML MSYG+AI V T   P 
Sbjct: 61  YCILGAILACVLGLFYRSMNRVVAPAKAGPRLNYQTATLLYMLAMSYGLAIFVTTGLAPQ 120

Query: 121 YQQCQMYTEKLNGGLRHYRGEDFLVELCGTGSGD-NRHDQIRLRIFDEQGQWRAVRYFTV 179
           Y+ C+ YT+KLNGG+R YRG  F VELCG G  + +R D++RLRI+DE G  RAVRYF V
Sbjct: 121 YRDCETYTQKLNGGVRQYRGLSFRVELCGAGPRESDRLDRVRLRIYDESGDLRAVRYFGV 180

Query: 180 QWGGHYPLLIDYARDHLAYFDASEGEDEEFVKVVAMPPTLADWLSTRIPLLD 231
           QWG  +P L++Y+RDHL+YFDA  G++E+F +V+AMPPTLADW+ TRIPLLD
Sbjct: 181 QWGRDFPALLEYSRDHLSYFDA--GDEEDFARVIAMPPTLADWVQTRIPLLD 230


>gi|300312436|ref|YP_003776528.1| hypothetical protein Hsero_3136
           [Herbaspirillum seropedicae SmR1]
          Length = 198

 Score = 94.4 bits (233), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 85/158 (53%), Gaps = 14/158 (8%)

Query: 82  VIGQAQPRWQPAYWTTTLLYMLVMSYGVAIAVVTS-TRPHYQQCQMYT--EKLNGGLRHY 138
           V  Q QP W+     T   + L +   +A+ ++   TRPHY +C  Y   + L+GG++  
Sbjct: 46  VAAQPQP-WRDMQTRTVKFFGLALLVSLALGLIIHFTRPHYGRCDFYNRPDTLDGGVKLL 104

Query: 139 RGEDFLVELCGTGSGD--NRHDQIRLRIFDEQGQWRAVRYFTVQW----GGHYPLLIDYA 192
            G  +  ++CGTG  D     D+I L++F++QG   A RYF+V W    G H PL   Y 
Sbjct: 105 NGTSYRFQMCGTGGNDQDGTDDKIELKVFNDQGTLLARRYFSVNWYAGKGFHQPLT--YE 162

Query: 193 RDHLAYFDASEGEDEEFVKVVAMPPTLADWLSTRIPLL 230
            D + Y D +  E+ E+ K +++PPT  DW+  R+PL 
Sbjct: 163 NDSVRYIDVT--ENSEYEKRLSIPPTKWDWIRARLPLF 198


>gi|300309912|ref|YP_003774004.1| hypothetical protein Hsero_0577
           [Herbaspirillum seropedicae SmR1]
          Length = 122

 Score = 65.1 bits (157), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 60/113 (53%), Gaps = 5/113 (4%)

Query: 118 RPHYQQCQMYTEKLNGGLRHYRGEDFLVELCGTGSGDNRHDQIRLRIFDEQGQWRAVRYF 177
           +P Y +C+ +T+ LNGG + + G  + ++LCG    +    +IRL++F   G   A RYF
Sbjct: 15  QPTYGRCESFTKDLNGGEKIFHGAMYDIKLCGADIKNGT--KIRLQVFGRSGDLLAERYF 72

Query: 178 TVQWGGHYPLLIDYARDHLAYFDASEGEDEEFVKVVAMPPTLADWLSTRIPLL 230
           +          +    D + YFD++    E  ++ +++PPT  DW+  R+PL 
Sbjct: 73  SYYVNSATERDLTEGVDSIIYFDSAR---ESPMQSISIPPTKWDWIRARLPLF 122


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.139    0.480 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 759,977
Number of extensions: 30444
Number of successful extensions: 126
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 3
Length of query: 231
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 149
Effective length of database: 1,231,600
Effective search space: 183508400
Effective search space used: 183508400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)