BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0076.p
         (233 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309790|ref|YP_003773882.1| membrane protein [Herbaspirillu...   405   e-114

>gi|300309790|ref|YP_003773882.1| membrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 268

 Score =  405 bits (1040), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/234 (91%), Positives = 228/234 (97%), Gaps = 1/234 (0%)

Query: 1   MFLMLALGIIPVLGQMLPLILIPLFSMSFMQACAQIERGERVFPNLLLIGFRSPARNTLL 60
           MFLMLALGIIPVLGQMLPLILIPLF+MSFMQACAQIE+GERV+PNLLL+GFRSPARNTLL
Sbjct: 35  MFLMLALGIIPVLGQMLPLILIPLFAMSFMQACAQIEKGERVYPNLLLVGFRSPARNTLL 94

Query: 61  KLGLLYLLVATLVVAASALADGGSFWKAMMGGGLSTEELQSAAGSIRIAMLVAAALYVPA 120
           KLGLLYLLVATLVVAASALADGG+FWKAMMGGGLST+EL+SAAGS+RIAMLVAAALYVPA
Sbjct: 95  KLGLLYLLVATLVVAASALADGGAFWKAMMGGGLSTKELESAAGSMRIAMLVAAALYVPA 154

Query: 121 AMAFWYAAPLIMWQQMPLGKALFYSFFAVRRAGRAFLVFGLAWIVIAIVVPTVISMAITL 180
           AMAFWYAAPLIMWQQMPLGKALFYSFF VRRAG AFLV+GLAWIVIAIVVP+VISM ITL
Sbjct: 155 AMAFWYAAPLIMWQQMPLGKALFYSFFTVRRAGGAFLVYGLAWIVIAIVVPSVISMVITL 214

Query: 181 LTGSITAVFFILLPISIILTVIMYCSFYPTYTSVFGKPRRGSDS-PHNGDNPIV 233
           LTGS +AVFFILLPISIILTV+MYCSFYPTYT+VFGKPRRGSDS PH+GDNP V
Sbjct: 215 LTGSFSAVFFILLPISIILTVVMYCSFYPTYTTVFGKPRRGSDSLPHSGDNPPV 268


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.331    0.143    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 631,156
Number of extensions: 21321
Number of successful extensions: 133
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 151
Effective length of database: 1,231,600
Effective search space: 185971600
Effective search space used: 185971600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 129 (54.3 bits)