BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0075.p (512 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309789|ref|YP_003773881.1| aerotaxis sensor receptor trans... 917 0.0 gi|300309849|ref|YP_003773941.1| aerotaxis sensor receptor trans... 558 e-160 gi|300312376|ref|YP_003776468.1| aerotaxis sensor receptor trans... 349 4e-97 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 304 1e-83 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 303 1e-83 >gi|300309789|ref|YP_003773881.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 520 Score = 917 bits (2371), Expect = 0.0, Method: Compositional matrix adjust. Identities = 464/520 (89%), Positives = 488/520 (93%), Gaps = 8/520 (1%) Query: 1 MRMNMPVTGQERLLIDGKAIVSKTDLQGNITYVNPYFIEISGFEEEELLGAPQNLIRHPD 60 MRMNMPVTGQERLLIDGKAIVSKTDL+GNITYVNPYFIEISGFEE ELLGAPQNLIRHPD Sbjct: 1 MRMNMPVTGQERLLIDGKAIVSKTDLKGNITYVNPYFIEISGFEENELLGAPQNLIRHPD 60 Query: 61 MPPEAFADMWATIKGGTPWTGLVKNRSKSGDHYWVRANVTPIRESGQVVGYMSVRTKPER 120 MP EAFADMWATIKGGTPWTGLVKNRSK+GDHYWVRANVTPIRE+GQ+VGYMSVRTKPER Sbjct: 61 MPAEAFADMWATIKGGTPWTGLVKNRSKNGDHYWVRANVTPIRENGQIVGYMSVRTKPER 120 Query: 121 AAVEGAEKLYASMRRGQAKGIALHRGEVVRTGLAGWLGKLGRMQLNTRLNWSMGVMLAIQ 180 AV GAEKLYAS+RRGQAKGIALHRGEVVRTGLAGWLGKL RMQLN+RLN SMG+MLAIQ Sbjct: 121 DAVAGAEKLYASIRRGQAKGIALHRGEVVRTGLAGWLGKLSRMQLNSRLNLSMGIMLAIQ 180 Query: 181 IAVVLAGMMTLHQWWISALAAASALLSIVQWIALRAALIKPLQQALDITHAITGGDLSVR 240 +AVV+AGM LHQWWISALAAA+ALLSIVQWIALR ALIKPL QALDITHAITGGDLSVR Sbjct: 181 LAVVVAGMAALHQWWISALAAAAALLSIVQWIALRNALIKPLHQALDITHAITGGDLSVR 240 Query: 241 IETGRHDELGRLLASLRQMNVNLTAIIGDVRSNVETINMATREIATGNMDLSRRTEQQAA 300 IET RHDELGRLL SLRQMNVNLTAIIGDVRSNVETI +ATREIA+GN+DLSRRTE QAA Sbjct: 241 IETTRHDELGRLLRSLRQMNVNLTAIIGDVRSNVETITLATREIASGNLDLSRRTEAQAA 300 Query: 301 NLEETASSMHQLAGTVRQNADHAGQANELAGTASSIAMRGGDAVASTGTTMNEISESSNK 360 NLEETASSMH+LA TVRQNADHA QAN+LAGTAS+IAMRGGDAVASTGTTMNEISESS+K Sbjct: 301 NLEETASSMHELASTVRQNADHAVQANDLAGTASAIAMRGGDAVASTGTTMNEISESSHK 360 Query: 361 IVDIISLIDSIAFQTNILALNAX--------QGRGFAVVASEVRMLAQRSAAAAKEIKQL 412 IVDIISLIDSIAFQTNILALNA QGRGFAVVASEVR LAQRSAAAAKEIK+L Sbjct: 361 IVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKEL 420 Query: 413 IDDSVAKVEVGNRQVEQASSTMRDIVASVQRVSGIMSEINEATQQQSAGINQVHEAITQM 472 ID SV KV++GNRQVEQA+STMRDIVASVQRVSGIM EI EATQQQSAGINQVHEAITQM Sbjct: 421 IDASVEKVDIGNRQVEQATSTMRDIVASVQRVSGIMGEIKEATQQQSAGINQVHEAITQM 480 Query: 473 DASTQQNASLVEEAAAAATSLEEQTMRLLQAISVFKFQRK 512 DASTQQNASLVEEAAAAA SL+EQT+RLLQAISVFKF R+ Sbjct: 481 DASTQQNASLVEEAAAAAGSLQEQTVRLLQAISVFKFNRR 520 >gi|300309849|ref|YP_003773941.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 554 Score = 558 bits (1437), Expect = e-160, Method: Compositional matrix adjust. Identities = 301/525 (57%), Positives = 382/525 (72%), Gaps = 19/525 (3%) Query: 1 MRMNMPVTGQERLLIDGKAIVSKTDLQGNITYVNPYFIEISGFEEEELLGAPQNLIRHPD 60 MR N+P+T ERLL DGK+IVSKTDLQGNI YVNPYFIEISGFEEEEL+GAPQN++RHP+ Sbjct: 1 MRKNLPITTTERLLEDGKSIVSKTDLQGNILYVNPYFIEISGFEEEELIGAPQNIVRHPE 60 Query: 61 MPPEAFADMWATIKGGTPWTGLVKNRSKSGDHYWVRANVTPIRESGQVVGYMSVRTKPER 120 MP EAFADMWAT+K G PW GLVKNR K+GD+YWV+ANVTP+RE+G+ VGYMSVRT+P R Sbjct: 61 MPREAFADMWATLKEGLPWNGLVKNRCKNGDYYWVQANVTPVRENGRAVGYMSVRTRPSR 120 Query: 121 AAVEGAEKLYASMRRGQAKGIALHRGEVVRTGLAGWLGKLGRMQLNTRLNWSMGVMLAIQ 180 V+ AE Y GQA+G+ +HRG VVRTGL GWL L + + RL W+MGV+ + Sbjct: 121 EQVQAAEAAYRKFSAGQARGLRVHRGAVVRTGLTGWLQGLRELPVARRLGWTMGVLTLMF 180 Query: 181 I--------AVVLAGMMTLHQWWISALAAASALLSIVQWIALRAALIKPLQQALDITHAI 232 I AV+ AG W + AA AL+ + W L A+++ PLQ+A+ H + Sbjct: 181 ILGGAVAGNAVMSAGGSPFAVWLGT---AAGALMLLASWAMLHASIVAPLQRAIKAVHGL 237 Query: 233 TGGDLSVRIETGRHDELGRLLASLRQMNVNLTAIIGDVRSNVETINMATREIATGNMDLS 292 GGDL I+T ++G LL +L+Q+NVNL AIIGDVR NVE++ ++T EIA GNMDLS Sbjct: 238 AGGDLDSHIDTTARGDMGLLLQALQQLNVNLRAIIGDVRRNVESMTISTGEIANGNMDLS 297 Query: 293 RRTEQQAANLEETASSMHQLAGTVRQNADHAGQANELAGTASSIAMRGGDAVASTGTTMN 352 RTE QA+ LEETASS+ + A TVRQNAD A A+ A +AS+IA RGG +V G TM Sbjct: 298 GRTEAQASALEETASSVEEFAATVRQNADSAANADRQAQSASAIAQRGGSSVQRMGRTME 357 Query: 353 EISESSNKIVDIISLIDSIAFQTNILALNAX--------QGRGFAVVASEVRMLAQRSAA 404 EI +S+KIVDII LID I+FQTNILALNA QGRGFAVVA+EVR LAQRSAA Sbjct: 358 EIDAASHKIVDIIGLIDGISFQTNILALNAAVEAARAGEQGRGFAVVAAEVRTLAQRSAA 417 Query: 405 AAKEIKQLIDDSVAKVEVGNRQVEQASSTMRDIVASVQRVSGIMSEINEATQQQSAGINQ 464 AAK+IK LIDDS AKVE GN+ V + + M ++ +V+ ++ M+EI A+ +QS GI Q Sbjct: 418 AAKDIKGLIDDSRAKVESGNQLVRETAQAMGELGGAVENMAVTMAEITVASNEQSGGIEQ 477 Query: 465 VHEAITQMDASTQQNASLVEEAAAAATSLEEQTMRLLQAISVFKF 509 +++A+ +D +TQQNA+LVE+AAAAA +L +Q ++L QA+SVFK Sbjct: 478 LNQAVNAIDETTQQNAALVEQAAAAAENLRDQAVKLSQAVSVFKI 522 >gi|300312376|ref|YP_003776468.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 493 Score = 349 bits (895), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 211/501 (42%), Positives = 303/501 (60%), Gaps = 23/501 (4%) Query: 21 VSKTDLQGNITYVNPYFIEISGFEEEELLGAPQNLIRHPDMPPEAFADMWATIKGGTPWT 80 +S TD +TY N F+E+SGF E+L+G P N++RHPDMP EAFADMWAT++ G WT Sbjct: 1 MSSTDTSSVLTYANSSFVEVSGFHREQLIGQPHNIVRHPDMPREAFADMWATLRRGDAWT 60 Query: 81 GLVKNRSKSGDHYWVRANVTPIRESGQVVGYMSVRTKPERAAVEGAEKLYASMRRGQAKG 140 +VKNR G HYWVRANVTPIR G + G++SVRT+P + A LY R G+A+G Sbjct: 61 AVVKNRRADGRHYWVRANVTPIRRGGGITGFLSVRTQPAPHEIRAAAALYRRFREGRARG 120 Query: 141 IALHRGEVVRTGLAGWLGKLGRMQLNTRLNWSMGVMLAIQIAVVLAGMMTLHQWWISALA 200 + G VVR+GL GW TRL + V +++A+ G+ L ++ Sbjct: 121 LRFCHGLVVRSGLLGW----------TRLEQVLPVRWRLRLALAAGGLTALAGGILAGAP 170 Query: 201 AASALLSIVQWIALRAA-----LIKPLQQALDITHAITGGDLSVRIETGRHDELGRLLAS 255 A S++ +AL L PL+ L A+ G + R DE+G LL + Sbjct: 171 LAPMAASVLPPLALACLWLERRLAAPLELVLQQAKAVACGQPAQTQGLDRIDEIGLLLRA 230 Query: 256 LRQMNVNLTAIIGDVRSNVETINMATREIATGNMDLSRRTEQQAANLEETASSMHQLAGT 315 + Q +NL A+I DV + V+ + A+R+IA+ N DL +RT A L++TAS+ Q+A Sbjct: 231 VNQSGLNLRALIDDVAAQVQGLEQASRQIASDNADLRQRTADTHAQLQQTASAAEQMATA 290 Query: 316 VRQNADHAGQANELAGTASSIAMRGGDAVASTGTTMNEISESSNKIVDIISLIDSIAFQT 375 VR +AD A A+ A S A +G D V TM++I+++S +I +I LIDSIAFQT Sbjct: 291 VRHSADSAQAAHAQARQTSQAAAQGRDIVTQVVQTMHQIADASGRIGEINGLIDSIAFQT 350 Query: 376 NILALNAX--------QGRGFAVVASEVRMLAQRSAAAAKEIKQLIDDSVAKVEVGNRQV 427 NILALNA GRGFAVVA+EVR LAQRSA+AA+EIK LI SV + + G ++ Sbjct: 351 NILALNAAVEAARAGEAGRGFAVVAAEVRTLAQRSASAAREIKALIAHSVGQSQAGAQRA 410 Query: 428 EQASSTMRDIVASVQRVSGIMSEINEATQQQSAGINQVHEAITQMDASTQQNASLVEEAA 487 EQA++ + IVA Q +S ++ I+ + +QS G++QV ++ +D TQQNA++VE +A Sbjct: 411 EQAAAAIESIVAQAQDMSTLIGAISTSAVEQSQGVSQVSQSALMLDGMTQQNAAMVEHSA 470 Query: 488 AAATSLEEQTMRLLQAISVFK 508 AA +++++ L QA++VF+ Sbjct: 471 AAVAAMQQRMQTLQQAVAVFE 491 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 304 bits (778), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 175/322 (54%), Positives = 237/322 (73%), Gaps = 8/322 (2%) Query: 198 ALAAASALLSIVQWIALRAALIKPLQQALDITHAITGGDLSVRIETGRHDELGRLLASLR 257 A + A+ L +I+ + +++KPL +A+ + + GDL+ RIE DE G+L+ +LR Sbjct: 197 ACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDLTTRIEPHSRDETGQLMQALR 256 Query: 258 QMNVNLTAIIGDVRSNVETINMATREIATGNMDLSRRTEQQAANLEETASSMHQLAGTVR 317 +MN NL I+ VR E+I A+ EIA+GN+DLS RTEQQA +LEETAS+M ++ TVR Sbjct: 257 KMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGSLEETASAMEEMTSTVR 316 Query: 318 QNADHAGQANELAGTASSIAMRGGDAVASTGTTMNEISESSNKIVDIISLIDSIAFQTNI 377 QNAD+A QAN++A +AS IA++GG V TM+EI++SS KIVDII +ID IAFQTNI Sbjct: 317 QNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKIVDIIGVIDGIAFQTNI 376 Query: 378 LALNAX--------QGRGFAVVASEVRMLAQRSAAAAKEIKQLIDDSVAKVEVGNRQVEQ 429 LALNA QGRGFAVVA+EVR LAQRSAAAAKEIK LI DSV KVE G+ V Q Sbjct: 377 LALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIADSVGKVEGGSALVAQ 436 Query: 430 ASSTMRDIVASVQRVSGIMSEINEATQQQSAGINQVHEAITQMDASTQQNASLVEEAAAA 489 A +TM +V+SV+ V+ I++EI+ A+ +QS+GI +++ A+TQMD TQQNA+LVE+AAAA Sbjct: 437 AGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMDEGTQQNAALVEQAAAA 496 Query: 490 ATSLEEQTMRLLQAISVFKFQR 511 A S++EQ +RL Q+IS+FK ++ Sbjct: 497 AKSMQEQAVRLTQSISIFKLEQ 518 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 303 bits (777), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 182/325 (56%), Positives = 239/325 (73%), Gaps = 8/325 (2%) Query: 195 WISALAAASALLSIVQWIALRAALIKPLQQALDITHAITGGDLSVRIETGRHDELGRLLA 254 WI L AA ++++ + + A+ +PL +A+ + + GDL++ I DE G L+ Sbjct: 192 WIIGLLAAIVVIALGLAVMVARAVSRPLNEAVAVAERVAQGDLTMDIRATSTDETGMLMH 251 Query: 255 SLRQMNVNLTAIIGDVRSNVETINMATREIATGNMDLSRRTEQQAANLEETASSMHQLAG 314 SLR MN +L I+G+VR+ +TI A++EIATGN+DLS RTE+QA +LEETAS+M +L Sbjct: 252 SLRAMNDSLQQIVGEVRTGTDTITTASQEIATGNLDLSSRTEEQAGSLEETASAMEELTA 311 Query: 315 TVRQNADHAGQANELAGTASSIAMRGGDAVASTGTTMNEISESSNKIVDIISLIDSIAFQ 374 TV+QNAD+A QAN+LA +AS IA +GG V TM I+ESSN+I DIIS+ID IAFQ Sbjct: 312 TVKQNADNARQANQLAASASDIATQGGAVVGQVVQTMEGITESSNRIADIISVIDGIAFQ 371 Query: 375 TNILALNAX--------QGRGFAVVASEVRMLAQRSAAAAKEIKQLIDDSVAKVEVGNRQ 426 TNILALNA QGRGFAVVASEVR LAQRSA+AAKEIKQLIDDSV KV G++ Sbjct: 372 TNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDSVEKVGAGSQL 431 Query: 427 VEQASSTMRDIVASVQRVSGIMSEINEATQQQSAGINQVHEAITQMDASTQQNASLVEEA 486 VE+A +TM ++VASV+RV+ +++EI+ A+ +QS GI +++ AITQMD TQQNA+LVEEA Sbjct: 432 VERAGATMSEVVASVRRVTDVVAEISAASNEQSTGIEEINRAITQMDEVTQQNAALVEEA 491 Query: 487 AAAATSLEEQTMRLLQAISVFKFQR 511 AAAA SL++Q RL Q +SVFK QR Sbjct: 492 AAAAQSLQDQAARLSQVVSVFKLQR 516 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.127 0.350 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,374,700 Number of extensions: 54166 Number of successful extensions: 661 Number of sequences better than 1.0e-08: 68 Number of HSP's gapped: 344 Number of HSP's successfully gapped: 69 Length of query: 512 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 423 Effective length of database: 1,198,455 Effective search space: 506946465 Effective search space used: 506946465 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)