BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0070.p (364 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H... 712 0.0 gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [H... 389 e-109 gi|300309616|ref|YP_003773708.1| maltose/maltodextrin ABC transp... 372 e-104 gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 358 e-100 gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 340 8e-95 >gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/372 (94%), Positives = 358/372 (96%), Gaps = 8/372 (2%) Query: 1 MAAVSIRNLAKRYDDNEVMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGDL 60 MAAVSIRNLAKRYDDNEVMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGDL Sbjct: 1 MAAVSIRNLAKRYDDNEVMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGDL 60 Query: 61 DIGTRRMNDVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAKI 120 DIG RRMN+VPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAKI Sbjct: 61 DIGARRMNEVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAKI 120 Query: 121 LHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKLH 180 LHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKLH Sbjct: 121 LHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKLH 180 Query: 181 DDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGFIGSPKMN 240 DDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGFIGSPKMN Sbjct: 181 DDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGFIGSPKMN 240 Query: 241 FIEGTVAAVQADGVQVQLPGGGLQWAAVDGSTLQAGQKVTLGVRPEHLNIAQGQAALQAR 300 FI+GTVAA+QADGVQVQLPGGGLQWAAVDGSTLQ GQKVTLGVRPEHLNIAQGQAALQAR Sbjct: 241 FIDGTVAAIQADGVQVQLPGGGLQWAAVDGSTLQVGQKVTLGVRPEHLNIAQGQAALQAR 300 Query: 301 CTALELLGDFSYLYAAHEGSDDALILRVPDSLDPPHGSVLQLAADPARCHLFGAD----- 355 CTALELLGDFSYLYAA+EGS+DALILRVPDSLD PHGSVL LAADPARCHLFGAD Sbjct: 301 CTALELLGDFSYLYAAYEGSEDALILRVPDSLDAPHGSVLPLAADPARCHLFGADGQALP 360 Query: 356 ---TELAAARPH 364 + +AA RPH Sbjct: 361 RLASSVAAPRPH 372 >gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 389 bits (999), Expect = e-109, Method: Compositional matrix adjust. Identities = 208/375 (55%), Positives = 257/375 (68%), Gaps = 12/375 (3%) Query: 1 MAAVSIRNLAKRYDDN-EVMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGD 59 MA V+I+ L K YD +V+ +NL+I DGEF V VGPSGCGKSTLLRM+ GLEEIS G+ Sbjct: 1 MAHVNIKQLRKTYDGRADVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEEISGGE 60 Query: 60 LDIGTRRMNDVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAK 119 L IG + +N +P ++RG+AMVFQSYALYPHM++Y NMAFGLK+AG SK++IDA ++HAA Sbjct: 61 LAIGGQVVNHLPPAERGIAMVFQSYALYPHMNVYKNMAFGLKVAGNSKSDIDARIRHAAA 120 Query: 120 ILHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKL 179 IL IDHLL R PR LSGGQRQRVAIGRAI RQP +FLFDEPLSNLDAALRV+ RLE AKL Sbjct: 121 ILKIDHLLQRLPRELSGGQRQRVAIGRAIVRQPRLFLFDEPLSNLDAALRVQTRLEIAKL 180 Query: 180 HDDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGFIGSPKM 239 H L T++YVTHDQ+EAMTL DKIVV+ EGRI+Q G+P +LY P N FVAGFIGSPKM Sbjct: 181 HRQLAATIVYVTHDQVEAMTLGDKIVVMHEGRIQQAGTPLELYQQPQNLFVAGFIGSPKM 240 Query: 240 NFIEGTVAAVQADGVQVQLPGGGLQWAAVDGSTLQAGQKVTLGVRPEHLNIAQGQAA-LQ 298 NF +G V GVQV++ GG A VD + G VTLG+R E + G L Sbjct: 241 NFFQGVVTRCDDSGVQVEIAGGLRLLADVDPLGVTPGAAVTLGLRAEQIREGLGDGQPLH 300 Query: 299 ARCTALELLGDFSYLYAAHEGSDDALILRVPDSLDPPHGSVLQLAADPARCHLFGADTE- 357 +E LG+ ++LY +G D +++R + + G + L+ HLF A + Sbjct: 301 GVVNLVEHLGEANFLYVTLDGGHD-IVVRGDGNRNVDIGQPIALSVHSHAFHLFDAQGQA 359 Query: 358 --------LAAARPH 364 L AAR H Sbjct: 360 LRRRTPGNLQAARRH 374 >gi|300309616|ref|YP_003773708.1| maltose/maltodextrin ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 381 Score = 372 bits (955), Expect = e-104, Method: Compositional matrix adjust. Identities = 191/365 (52%), Positives = 256/365 (70%), Gaps = 11/365 (3%) Query: 1 MAAVSIRNLAKRYDDNE-VMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGD 59 MA++++R K Y D V+R+++L+I + EF VF+GPSGCGKSTLLR IAGLE+++ GD Sbjct: 1 MASITLRAAQKAYGDAPPVIRNVDLDIGEHEFCVFLGPSGCGKSTLLRSIAGLEDLTSGD 60 Query: 60 LDIGTRRMNDVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAK 119 L IG +R+NDVP+++R VAMVFQSYAL+PHM++Y+NM+FGL +A KAEI+ V+ AA+ Sbjct: 61 LFIGGKRVNDVPSAQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAAR 120 Query: 120 ILHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKL 179 IL ++ LL RKP+ LSGGQRQRVAIGRAI R+P VFLFDEPLSNLDA LR + R+E A+L Sbjct: 121 ILQLEELLQRKPKELSGGQRQRVAIGRAIVRRPGVFLFDEPLSNLDATLRSQTRIEIARL 180 Query: 180 HDDL-KTTMIYVTHDQIEAMTLADKIVVLSE-------GRIEQVGSPQQLYHHPANRFVA 231 H + +++YVTHDQ+EAMTLAD+IV+L G I QVG+P +LYHHP NRFVA Sbjct: 181 HRQFEQASVVYVTHDQVEAMTLADRIVLLHAGADTQRFGSIAQVGTPMELYHHPRNRFVA 240 Query: 232 GFIGSPKMNFIEGTVAAVQADGVQVQLPGGGLQWAAVDGSTLQAGQKVTLGVRPEHLNI- 290 GFIGSP+MNF+ VA VQ +G+ V+L G LQ GQ VT+GVRPEH+ I Sbjct: 241 GFIGSPRMNFLPAQVAGVQENGILVRLSGSEETLLVAAQGALQPGQMVTVGVRPEHMEIG 300 Query: 291 AQGQAALQARCTALELLGDFSYLYAAHEGSDDALILRVPDSLDPPHGSVLQLAADPARCH 350 +QGQ + +E LG+ +Y++ E + L+ + G +++A PA + Sbjct: 301 SQGQYGIHREVVLVERLGEQTYVH-LDEPAGQPLVAKAAGDARITRGERVRVAIAPACAY 359 Query: 351 LFGAD 355 LF D Sbjct: 360 LFDQD 364 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 358 bits (919), Expect = e-100, Method: Compositional matrix adjust. Identities = 190/358 (53%), Positives = 244/358 (68%), Gaps = 6/358 (1%) Query: 1 MAAVSIRNLAKRYDDNEVMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGDL 60 MA+V IR + K++ +++R ++++I DGEF V VGPSGCGKSTLLRM+AGLEEI+ G++ Sbjct: 1 MASVQIRAVKKQFGSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEI 60 Query: 61 DIGTRRMNDVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAKI 120 IG +N+V R +AMVFQ+YALYPHM++ DNMAF L +A K KA +D V+ AA I Sbjct: 61 LIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERVKKAADI 120 Query: 121 LHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKLH 180 L ++ LLDR PR LSGGQRQRVA+GRAI R P VFLFDEPLSNLDA LRV+MR E +LH Sbjct: 121 LGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKELH 180 Query: 181 DDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGFIGSPKMN 240 LKTT IYVTHDQIEAMT+AD+IVV+ +G +EQ G P LY +PAN FVAGFIGSP MN Sbjct: 181 QRLKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDYPANLFVAGFIGSPAMN 240 Query: 241 FIEGTVAAVQADGVQVQLPGGGLQWAAVDGSTLQA--GQKVTLGVRPEHLNIAQGQAALQ 298 FI T+ A G +V+ G + A G+ LQ GQKVT GVRPEHL+I + Sbjct: 241 FIPATLRR-NATGAEVEF-ADGTRVPAPYGAALQGNDGQKVTYGVRPEHLSIGAAGQGIA 298 Query: 299 ARCTALELLGDFSYLYAAHEGSDDALILRVPDSLDPPHGSVLQLAADPARCHLFGADT 356 + +E G + +++ + I R + D G V+ L D +R HLF A++ Sbjct: 299 TKVIVVEPTGADTEVFSRFGDTSLTSIFR--ERHDFGAGDVIHLVPDHSRTHLFDAES 354 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 340 bits (873), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 187/360 (51%), Positives = 239/360 (66%), Gaps = 13/360 (3%) Query: 1 MAAVSIRNLAKRYDDN----EVMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEEIS 56 MAA+ ++ + K Y +V+ I+ EI DGEF+V VGPSGCGKSTLLRM+AGLEEIS Sbjct: 1 MAAIHLKQVRKTYGAGTKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEIS 60 Query: 57 DGDLDIGTRRMNDVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQH 116 G + IG R +ND+ +R +AMVFQ+YALYPHM++Y NMA+GLKI G SK+EIDA VQ Sbjct: 61 SGQIVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARVQR 120 Query: 117 AAKILHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEF 176 AA IL + LL+R PR LSGGQRQRVA+GRAI R+P+VFLFDEPLSNLDA LRV+MRLE Sbjct: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 Query: 177 AKLHDDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGFIGS 236 KLH L+TT +YVTHDQ+EAMTL +++V++ G EQ+G+P ++Y PA FVA FIGS Sbjct: 181 QKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS 240 Query: 237 PKMNFIEGTVAAVQADGVQVQLPGGGLQ--WAAVDGSTLQAGQKVTLGVRPEH-LNIAQG 293 P MN ++G ++ ADG ++ G T AGQ+ LGVRPEH L I G Sbjct: 241 PPMNLLQGKLS---ADGASFEVSKGNASDILRLPQPLTGAAGQERILGVRPEHLLPILDG 297 Query: 294 QAA-LQARCTALELLGDFSYLYAAHEGSDDALILRVPDSLDPPHGSVLQLAADPARCHLF 352 AA L +E LG ++A G AL+LR P ++ G + + H F Sbjct: 298 SAAQLSLEVELVEALGAELLVHARCGG--QALVLRCPANVQVRTGQRIGASFGAGDVHWF 355 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,080,147 Number of extensions: 43263 Number of successful extensions: 570 Number of sequences better than 1.0e-08: 131 Number of HSP's gapped: 346 Number of HSP's successfully gapped: 140 Length of query: 364 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 278 Effective length of database: 1,212,660 Effective search space: 337119480 Effective search space used: 337119480 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)