BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0069.p
         (241 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309784|ref|YP_003773876.1| phosphatase/phosphohexomutase [...   455   e-129
gi|300309498|ref|YP_003773590.1| sugar transferase [Herbaspirill...    99   4e-22
gi|300313787|ref|YP_003777879.1| HAD-superfamily hydrolase [Herb...    63   2e-11

>gi|300309784|ref|YP_003773876.1| phosphatase/phosphohexomutase
           [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score =  455 bits (1170), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 228/244 (93%), Positives = 231/244 (94%), Gaps = 3/244 (1%)

Query: 1   MMARQAITHLICDCDGVLLDSESIALRVLHRELLPLLPAWSGA---DDDEQEEQRSQALH 57
           MM RQAITHLICDCDGVLLDSESIALRVLHRELLPLLPAWSGA   DD EQEEQRS ALH
Sbjct: 1   MMTRQAITHLICDCDGVLLDSESIALRVLHRELLPLLPAWSGAGGADDGEQEEQRSAALH 60

Query: 58  TAIAHRLGMYTDILLGEVDLEFELGLDAAAAERIHQAVAAACGEEAQPVPGVVEALQAIR 117
            AIAHRLGMYTDILLGEVD+EFELGLDAA AERIHQ VA ACG+EA PVPGVVEALQAIR
Sbjct: 61  AAIAHRLGMYTDILLGEVDMEFELGLDAAQAERIHQTVALACGDEALPVPGVVEALQAIR 120

Query: 118 LPRAVASNSDAPRIEAGLRRCGLYPQFAGRIYSGHDVAHPKPAPDVYLAAAAGFNVDPAR 177
           LPRAVASNSDAPRIEAGLRRCGLYPQFAGRIYSGHDVAHPKPAPDVYLAAAAGF VDP+R
Sbjct: 121 LPRAVASNSDAPRIEAGLRRCGLYPQFAGRIYSGHDVAHPKPAPDVYLAAAAGFGVDPSR 180

Query: 178 CVAVDDSVTGVRAAVAAGMHVLGFTGVAHDRKTMARKLKDAGAHQVFEDMKQFPQLVSEL 237
           CVAVDDSVTGVRAAVAAGMHVLGFTGVAHDRKTMARKLKDAGAHQVFEDMK FPQLVSEL
Sbjct: 181 CVAVDDSVTGVRAAVAAGMHVLGFTGVAHDRKTMARKLKDAGAHQVFEDMKLFPQLVSEL 240

Query: 238 IWLR 241
           IWLR
Sbjct: 241 IWLR 244


>gi|300309498|ref|YP_003773590.1| sugar transferase [Herbaspirillum
           seropedicae SmR1]
          Length = 215

 Score = 98.6 bits (244), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/201 (34%), Positives = 98/201 (48%), Gaps = 32/201 (15%)

Query: 10  LICDCDGVLLDSESIALRVLHRELLPLLPAWSG---------ADDDEQEEQRSQALHTAI 60
           +I DCDG L+DSE +A R           AWS            +D     R  ++   I
Sbjct: 11  VIFDCDGTLVDSEVVAAR-----------AWSEYVATYGVQLTPEDALARFRGVSMSWCI 59

Query: 61  AHRLGMYTDILLGEVDLEFELGLDAAAAERIHQAVAAACGEEAQPVPGVVEALQAIRLPR 120
           AH   +    L       FE  L A     + Q +        QP+ G +E ++ +++P 
Sbjct: 60  AHVAQLRGQALPAH----FEQELRARMGVMLEQHL--------QPINGALEMVEQLQIPF 107

Query: 121 AVASNSDAPRIEAGLRRCGLYPQFAGRIYSGHDVAHPKPAPDVYLAAAAGFNVDPARCVA 180
           A+ASN+   +IE  LR  GL P F GRI+S +DV   KP P ++L AA    V PARC  
Sbjct: 108 ALASNAPHHKIELCLRVTGLLPHFHGRIFSAYDVQRWKPDPALFLFAAERLGVPPARCAV 167

Query: 181 VDDSVTGVRAAVAAGMHVLGF 201
           V+DS+ GV+A +AAGM V+  
Sbjct: 168 VEDSLPGVQAGLAAGMKVIAL 188


>gi|300313787|ref|YP_003777879.1| HAD-superfamily hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 278

 Score = 63.2 bits (152), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 91/225 (40%), Gaps = 23/225 (10%)

Query: 7   ITHLICDCDGVLLDSESIALRVLHRELLPLLPAWSGADDDEQEEQRSQALHTAIAHRLGM 66
           ITH + D DG L+DS+++     H     +L  W    D E  +           H +G 
Sbjct: 62  ITHFLFDLDGTLMDSDALH----HAAFNTILARWDRHIDVEYYK----------THIMGA 107

Query: 67  YTDILLGEVDLEFELGLDAAAAERIHQAVAAACGEEAQPVPGVVEALQAIRL---PRAVA 123
              ++ G +            AE       +   +  +P PG+   L+ IR      AV 
Sbjct: 108 SNAMIFGHLFPGMPAEQYLPLAEEKESLFRSQLDQRVEPTPGIERLLEHIRRIGGRSAVV 167

Query: 124 SNSDAPRIEAGLRRCGLYPQFAGRIYSGHDVAHPKPAPDVYLAAAAGFNVDPARCVAVDD 183
           +N+     E  L+  GL  QF   +  G ++A  KP P  YL        +    VA +D
Sbjct: 168 TNAPRANAELMLKATGLAGQFDTLVI-GDELARAKPDPLPYLTGLQLLGGEAGAAVAFED 226

Query: 184 SVTGVRAAVAAGMHVLGFTGVAHDRKTMARKLKDAGAHQVFEDMK 228
           S +GV+AA +AG+   G  G   +      +L+ AGAH V  D  
Sbjct: 227 SSSGVKAASSAGIWTFGMLGGLDE-----ARLRAAGAHAVIRDFN 266


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 763,941
Number of extensions: 33061
Number of successful extensions: 133
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 3
Length of query: 241
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 158
Effective length of database: 1,226,865
Effective search space: 193844670
Effective search space used: 193844670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)