BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0064.p
         (304 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309780|ref|YP_003773872.1| transcription regulator [Herbas...   593   e-171
gi|300312385|ref|YP_003776477.1| SorC family transcription regul...    93   2e-20

>gi|300309780|ref|YP_003773872.1| transcription regulator
           [Herbaspirillum seropedicae SmR1]
          Length = 320

 Score =  593 bits (1530), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 289/304 (95%), Positives = 295/304 (97%)

Query: 1   MYYVAGNTQNEIAERLGISRQMAQRMVAYAADANLVKVQITHPVSSCLELAQGLQERYGL 60
           MYYVAGNTQNEIAERLGISRQMAQRMVAYAADANLVKVQITHPVSSCLELAQGLQERYGL
Sbjct: 17  MYYVAGNTQNEIAERLGISRQMAQRMVAYAADANLVKVQITHPVSSCLELAQGLQERYGL 76

Query: 61  EVCRVVPGAGGAENPNESQEVQQMLAVAGAEVMEQYLSSEAPLVVNVGSGRTLKAAIERL 120
           +VCRVVPGAGGA NPNESQEVQQMLAVAGAE+MEQYL SEAPLVVNVGSGRTLKAAIERL
Sbjct: 77  DVCRVVPGAGGAGNPNESQEVQQMLAVAGAELMEQYLGSEAPLVVNVGSGRTLKAAIERL 136

Query: 121 SELERPQHQIVSMIGAFASDGSANRYDVALQAAEKLGARFYLLPAPRVAESERDRQQWCN 180
           SELERPQHQIVSMIGAFASDGSANRYDVALQAAEKLGARFYLLPAPRVAESE DRQQWCN
Sbjct: 137 SELERPQHQIVSMIGAFASDGSANRYDVALQAAEKLGARFYLLPAPRVAESESDRQQWCN 196

Query: 181 HRAYKIVTGLAERADVTFLGIGTIALQGAMHEDGFIDDEEVADLQRQGAIGEMICHAFDI 240
           HRAYKIVTGLAERADVTFLGIGTIALQGAMHEDGFIDD EVA+LQRQGA+GEMICHAFDI
Sbjct: 197 HRAYKIVTGLAERADVTFLGIGTIALQGAMHEDGFIDDGEVAELQRQGAVGEMICHAFDI 256

Query: 241 DGVMLPSSLAARVTTPPLAQAPQRPVIALSGGSKKADAVRAALRGGWLTGLVTDETCARH 300
           DGVMLPSSL+ARVTTPPL Q PQRPVIA  GGSKKA+AVRAALRGGWLTGLVTDE CARH
Sbjct: 257 DGVMLPSSLSARVTTPPLTQRPQRPVIAFCGGSKKAEAVRAALRGGWLTGLVTDEVCARH 316

Query: 301 ALQD 304
           ALQD
Sbjct: 317 ALQD 320


>gi|300312385|ref|YP_003776477.1| SorC family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 326

 Score = 93.2 bits (230), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 141/307 (45%), Gaps = 19/307 (6%)

Query: 1   MYYVAGNTQNEIAERLGISRQMAQRMVAYAADANLVKVQITHP--VSSCLELAQGLQERY 58
           +YY    T   IA+ +G SR    R++++A +  LV++++  P  VS  LE A  +   Y
Sbjct: 19  LYYFQNMTTAAIADEIGTSRATVSRLLSFALERGLVEIRVHDPQQVSGSLEAA--IANHY 76

Query: 59  GLEVCRVVPGAGGAENPNESQEVQQMLAVAGAEVMEQYLSSEAPLVVNVGSGRTLKAAIE 118
            L   +VVP A  A +    +E  Q +    A  +   ++     ++ +  G T+    +
Sbjct: 77  RLHSIQVVPVAAAATD----KETLQRVTCHAAAYVNSLVTPGT--IIGLAWGTTVAQIAD 130

Query: 119 RLSELERPQHQI--VSMIGAFASDGSANRYD--VALQAAEKLGARFYLLPAPRVAESERD 174
           +L  L R  H +  V++ G+ +     N +   +  + A+  GAR + LP P   +    
Sbjct: 131 QL--LPRHVHDVDVVALNGSGSGASFINSFSESIVSRFAQNYGARAHHLPVPAFFDYPET 188

Query: 175 RQQWCNHRAYKIVTGLAERADVTFLGIGTIALQGAMHEDGFIDDEEVADLQRQGAIGEMI 234
           R      ++ K +  L ERA +    IG  A    +H  G++ +EE   L+ +G +G++ 
Sbjct: 189 RTALWREKSIKAIRDLQERASILLFSIGAEATGSYIHTAGYLGEEERQILRDEGLVGDIA 248

Query: 235 CHAFDIDGVMLPSSLAARVTTPPLAQAPQRPVIALS--GGSKKADAVRAALRGGWLTGLV 292
              F  DG     +  AR + P +     R   AL    G+ K   ++AALRGG++  L+
Sbjct: 249 TVFFRADGSWRDVAFNARNSGPDM-DCFTRAAHALCVVSGAGKLPGLKAALRGGFINELI 307

Query: 293 TDETCAR 299
            DE  AR
Sbjct: 308 IDEPSAR 314


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 949,371
Number of extensions: 38925
Number of successful extensions: 175
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 2
Length of query: 304
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 219
Effective length of database: 1,217,395
Effective search space: 266609505
Effective search space used: 266609505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)