BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0062.p
         (365 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309776|ref|YP_003773868.1| DnaJ-class molecular chaperone ...   424   e-120

>gi|300309776|ref|YP_003773868.1| DnaJ-class molecular chaperone
           protein [Herbaspirillum seropedicae SmR1]
          Length = 367

 Score =  424 bits (1091), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 257/363 (70%), Positives = 287/363 (79%), Gaps = 5/363 (1%)

Query: 1   MNKPTPQTVAIVDGQSAMRLSPAQEQFNALIDAIGTRRAQLKEWEAASDEFHKKFTAQYV 60
           M+KPTP  V +V+GQSA RLSPAQE+FNALIDAIG RRA+LKEWE ASDEFH+K+ AQYV
Sbjct: 1   MHKPTPHDVTLVNGQSATRLSPAQEKFNALIDAIGARRARLKEWETASDEFHRKYAAQYV 60

Query: 61  PLEQELLTLKRQVVYRLHAAWPDKALGKGERIALSALIADMAQALLQRADDAELALTYQQ 120
           PLEQELL LKRQ VYRLH AW  KALGKGERI LSALIADMAQALLQR++DAELAL YQQ
Sbjct: 61  PLEQELLGLKRQAVYRLHEAWAHKALGKGERITLSALIADMAQALLQRSEDAELALIYQQ 120

Query: 121 HAEEEETEEPASVAEVHEDKTIQAEPAIAEDDFTTGTPEEIMQRMEAMLERQERERMQAA 180
           HAEEE   E A               +IAEDDFTTGTPEEIMQRMEAMLERQERER  AA
Sbjct: 121 HAEEEHAAEIAHAP-----SPPGGNESIAEDDFTTGTPEEIMQRMEAMLERQERERQAAA 175

Query: 181 QAREAQRASRKKPPKQRAAEARQQEQRIELSQSIRAVYRRLASALHPDRELDESERARKT 240
           QAREA RASRKKPPKQRAAE +QQ QR ELSQSIRAVYRRLASALHPDRE DE ER RKT
Sbjct: 176 QAREAGRASRKKPPKQRAAEHQQQAQRTELSQSIRAVYRRLASALHPDREPDEDERTRKT 235

Query: 241 ALMQQVNQAYEKNDLSRLLELQLELEQIDQRSIHGVSEERLTHYNHILTEQLGDLDQEIA 300
           ALMQQVNQAYEKNDL +LLELQLELE I + +   VSE RL HYN IL EQ  +LDQEI 
Sbjct: 236 ALMQQVNQAYEKNDLLKLLELQLELEHITRHTQTEVSEARLAHYNQILQEQADELDQEII 295

Query: 301 HMERHFRQTFGLGPAARVSPKGIGRDLNKVIAGMRQEMRDVGIVLGSFDDVEQVRAWLKQ 360
           H++R FR+ +GL   AR++P+ + R LN+ I  +RQE +D+   L +F D+EQVR+WLK 
Sbjct: 296 HVQRQFRRAYGLPSTARLTPEKMMRYLNRGITALRQEGQDLRAALAAFGDIEQVRSWLKH 355

Query: 361 GGR 363
             R
Sbjct: 356 ARR 358


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.128    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 939,607
Number of extensions: 33714
Number of successful extensions: 185
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 279
Effective length of database: 1,212,660
Effective search space: 338332140
Effective search space used: 338332140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)