BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0058.p
         (399 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309773|ref|YP_003773865.1| major facilitator superfamily p...   675   0.0  
gi|300309620|ref|YP_003773712.1| major facilitator superfamily p...   236   2e-63

>gi|300309773|ref|YP_003773865.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 413

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/398 (94%), Positives = 383/398 (96%)

Query: 1   VPAAAPRPLTPAKVTRQIIATAFFTFLVYLAIGIPMAVLPGYIHLDLGYSSVIAGLGISV 60
           VPAA PRPLTPAKVTRQIIATAFFTFLVYLAIGIPMAVLPGYIHLDLGYSSV+AGLGISV
Sbjct: 15  VPAAPPRPLTPAKVTRQIIATAFFTFLVYLAIGIPMAVLPGYIHLDLGYSSVMAGLGISV 74

Query: 61  QYFATFVSRANAGRMIDTMGAKHTVMRGMLLCSASGGLLLLSALAQPLPFLSLVLLFASR 120
           QYFATFVSRANAGRMIDT+GAK TVMRGMLLCSASG LLL SALAQPLPFLSLVLLFASR
Sbjct: 75  QYFATFVSRANAGRMIDTVGAKQTVMRGMLLCSASGALLLCSALAQPLPFLSLVLLFASR 134

Query: 121 AFLGLGESLVGTGAIMWGVGRVGSENTAKMISWNGIATYAALAIGAPLGVVLDRSLGFAM 180
           A LGLGESLVGTGAIMWGVGRVGSENTAKMISWNGIATYAALAIGAPLGVVLDRSLGFAM
Sbjct: 135 ALLGLGESLVGTGAIMWGVGRVGSENTAKMISWNGIATYAALAIGAPLGVVLDRSLGFAM 194

Query: 181 IGLTGMLLTVLGFVLARGGPVTPVVQGEQLSFKLVLRKVFAYGMGLAFGTIGFGSIATFI 240
           IGL+GMLLT LG+VLARGGPVTPVVQGEQLSFKLVLRKVFAYGMGLAFGTIGFGSIATFI
Sbjct: 195 IGLSGMLLTALGYVLARGGPVTPVVQGEQLSFKLVLRKVFAYGMGLAFGTIGFGSIATFI 254

Query: 241 TLYYADQHWSGAAFALTAFSSAFVGARLLFANVITRFGGYRVAVVCFLTESVGLLLLWSA 300
           TLYYAD HWSGAAFALTAFSSAFVGARLLFAN ITRFGGYRVAVV FLTE+VGLLLLWS 
Sbjct: 255 TLYYADLHWSGAAFALTAFSSAFVGARLLFANAITRFGGYRVAVVSFLTEAVGLLLLWST 314

Query: 301 TTPALALLGAALAGFGFALVFPSLGVEAVSLVSPANRGAALAAYSVFLDLALGITGPLAG 360
           TTP LALLGA LAGFGFALVFPSLGVEAV+LVSPANRGAALAAYSVFLDLALGITGPLAG
Sbjct: 315 TTPELALLGAGLAGFGFALVFPSLGVEAVNLVSPANRGAALAAYSVFLDLALGITGPLAG 374

Query: 361 AIAGQLGYPQVFLFAAIAAIGGVALSLSLYRSAQQGAK 398
           AIAGQLGYPQVFLFAAIAAIG VALSLSLYRSAQQ  K
Sbjct: 375 AIAGQLGYPQVFLFAAIAAIGAVALSLSLYRSAQQRGK 412


>gi|300309620|ref|YP_003773712.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 405

 Score =  236 bits (602), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 150/352 (42%), Positives = 208/352 (59%)

Query: 26  FLVYLAIGIPMAVLPGYIHLDLGYSSVIAGLGISVQYFATFVSRANAGRMIDTMGAKHTV 85
           F+ +L IG+ + VLP ++   LG ++ + G+ +  Q+ A  +SRA AG   D  GAK  V
Sbjct: 34  FIAFLTIGLQLPVLPLHLKDALGMNATVVGVVVGAQFAAALLSRAWAGNFADLRGAKRAV 93

Query: 86  MRGMLLCSASGGLLLLSALAQPLPFLSLVLLFASRAFLGLGESLVGTGAIMWGVGRVGSE 145
           M G +  + SG + L S      P  S+ +L   R  L LGESL+ TGA+ WG+G VG +
Sbjct: 94  MAGFITAALSGLVYLASLALLGRPDWSVAVLLLGRVVLALGESLMVTGAMSWGIGLVGPQ 153

Query: 146 NTAKMISWNGIATYAALAIGAPLGVVLDRSLGFAMIGLTGMLLTVLGFVLARGGPVTPVV 205
           +  K+++W GIA YAA   GAPLGV +++  GFA I L  + L++   +L          
Sbjct: 154 HGGKVMAWLGIALYAAFGAGAPLGVAINQIYGFAGISLASVGLSLAALLLIAPLRAIAPS 213

Query: 206 QGEQLSFKLVLRKVFAYGMGLAFGTIGFGSIATFITLYYADQHWSGAAFALTAFSSAFVG 265
              +  F  VL  V+  G+GLAF ++GFG I  FI L +A + W  AA A +AF +AF+ 
Sbjct: 214 AHRRTPFYQVLGAVWRPGLGLAFSSVGFGVITAFIALLFAARAWGNAALAFSAFGAAFIL 273

Query: 266 ARLLFANVITRFGGYRVAVVCFLTESVGLLLLWSATTPALALLGAALAGFGFALVFPSLG 325
           ARLLFA++  + GG RVA+VC L E+ G LL+W A     A LGAAL GFG++L FP  G
Sbjct: 274 ARLLFAHLPDKLGGARVALVCVLIEAAGQLLIWQADAAHWAYLGAALTGFGYSLAFPGFG 333

Query: 326 VEAVSLVSPANRGAALAAYSVFLDLALGITGPLAGAIAGQLGYPQVFLFAAI 377
           VEA+    P  RG A+ AY  FLDL+LGIT PLAG +A   G   ++L  A+
Sbjct: 334 VEAMRRAPPQTRGLAMGAYVAFLDLSLGITSPLAGVLASHAGVQSIYLAGAV 385


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.141    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,145,850
Number of extensions: 47890
Number of successful extensions: 366
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 363
Number of HSP's successfully gapped: 2
Length of query: 399
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 312
Effective length of database: 1,207,925
Effective search space: 376872600
Effective search space used: 376872600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)