BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0057.p
         (164 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309772|ref|YP_003773864.1| DNA-binding ferritin-like prote...   338   1e-94
gi|300313798|ref|YP_003777890.1| low temperature-induced protein...    80   8e-17

>gi|300309772|ref|YP_003773864.1| DNA-binding ferritin-like protein
           [Herbaspirillum seropedicae SmR1]
          Length = 164

 Score =  338 bits (867), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 163/164 (99%), Positives = 164/164 (100%)

Query: 1   MAKKNVAAPSINIGINDKDRKKIADGLSKLLADTYTLYLKTHNFHWNVTGPMFNTLHLMF 60
           MAKKNVAAPSINIGINDKDRKKIADGLSKLLADTYTLYLKTHNFHWNVTGPMFNTLHLMF
Sbjct: 1   MAKKNVAAPSINIGINDKDRKKIADGLSKLLADTYTLYLKTHNFHWNVTGPMFNTLHLMF 60

Query: 61  EGQYNELALAVDLIAERIRALGYPAPGSYKEFAKLSSIPEAEGVPNAQEMIAQLVAGQEA 120
           EGQYNELALAVDLIAERIRALGYPAPGSYKEFAKLSSIPEA+GVPNAQEMIAQLVAGQEA
Sbjct: 61  EGQYNELALAVDLIAERIRALGYPAPGSYKEFAKLSSIPEADGVPNAQEMIAQLVAGQEA 120

Query: 121 VTRTARSIFPTVDAAADEPTADLLTQRMQLHEKNAWMLRSLLEG 164
           VTRTARSIFPTVDAAADEPTADLLTQRMQLHEKNAWMLRSLLEG
Sbjct: 121 VTRTARSIFPTVDAAADEPTADLLTQRMQLHEKNAWMLRSLLEG 164


>gi|300313798|ref|YP_003777890.1| low temperature-induced protein
           [Herbaspirillum seropedicae SmR1]
          Length = 162

 Score = 80.1 bits (196), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 6/155 (3%)

Query: 6   VAAPSINIGINDKDRKKIADGLSKLLADTYTLYLKTHNFHWNVTGPMFNTLHLMFEGQYN 65
           +A P +   ++++ R+++   L+ LLAD + LYLKT NFHW+++GP F   HL+ + Q  
Sbjct: 4   LATPGV---LSEQARQEVGGALTMLLADVFALYLKTKNFHWHMSGPHFRDYHLLLDDQSQ 60

Query: 66  ELALAVDLIAERIRALGYPAPGSYKEFAKLSSIP--EAEGVPNAQEMIAQLVAGQEAVTR 123
           ++    D +AER+R +G     S     KL  +   +A+ V  A +M+A+L      +  
Sbjct: 61  QIIAITDAVAERVRKIGGTTLRSTGHIGKLQRLSDNDADFVTPA-DMLAELREDNLRLVG 119

Query: 124 TARSIFPTVDAAADEPTADLLTQRMQLHEKNAWML 158
              +     D   D  TA LL   +   E+ AW L
Sbjct: 120 FMMATHELCDQHGDVATASLLENWIDEAEQRAWFL 154


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.131    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 496,339
Number of extensions: 18760
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 2
Length of query: 164
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 86
Effective length of database: 1,250,540
Effective search space: 107546440
Effective search space used: 107546440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)