BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0050.p
         (545 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312990|ref|YP_003777082.1| signal peptide protein [Herbasp...    66   8e-12
gi|300313671|ref|YP_003777763.1| OmpA family protein [Herbaspiri...    58   2e-09
gi|300313316|ref|YP_003777408.1| lipoprotein [Herbaspirillum ser...    58   2e-09

>gi|300312990|ref|YP_003777082.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 203

 Score = 65.9 bits (159), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 43/69 (62%)

Query: 204 LLLVGHTDDTGSSRLNADLSERRARAVSRFMQEHGVPAASLYFQGAGEFYPIASNDTEDG 263
           ++ VGHTD  GS   N  LS RRA +V  ++   GV A  +Y +G G+  P+A N T  G
Sbjct: 128 IIAVGHTDSIGSVAYNQKLSVRRAESVKAYLVSKGVEANRVYTEGKGKSQPVADNKTAAG 187

Query: 264 RSRNRRVEI 272
           R++NRRVEI
Sbjct: 188 RAKNRRVEI 196


>gi|300313671|ref|YP_003777763.1| OmpA family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 241

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 41/69 (59%)

Query: 204 LLLVGHTDDTGSSRLNADLSERRARAVSRFMQEHGVPAASLYFQGAGEFYPIASNDTEDG 263
           + +VGHTD+TGS  +N  LS +RA     ++   GV A     QG G   P+ +N ++  
Sbjct: 142 VTIVGHTDNTGSDAINDPLSLQRASRTRDYLSSRGVAANRFSIQGRGSHEPLVANTSDAN 201

Query: 264 RSRNRRVEI 272
           R+RNRRVEI
Sbjct: 202 RARNRRVEI 210


>gi|300313316|ref|YP_003777408.1| lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 267

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 71/167 (42%), Gaps = 29/167 (17%)

Query: 105 KIAKQYQLDLQITALDNKGEAITTTDSAKAKQETAGSVVEVRDPAGAGGHFESNSDQLTA 164
           +IA      L  + + N G  ++T++        A  VV           FES    LT 
Sbjct: 125 QIASDMATSLNSSYIINNGLRVSTSEQGVLDNTLANRVVS----------FESGRATLTP 174

Query: 165 RARDYFTAIAATYDIRKSAAEIQDSNLRKQYLEKMAQRKLLLVGHTDDTGSSRLNADLSE 224
             +     IAAT                   + ++  R++ ++G+TD+ G    N  LS 
Sbjct: 175 EGKRILDEIAAT-------------------MLQLKGRRVEIIGNTDNEGLRASNISLSL 215

Query: 225 RRARAVSRFMQEHGVPAASLYFQGAGEFYPIASNDTEDGRSRNRRVE 271
            RA AV  ++   GV  + L   G G   P+ASN T +GR+RNRR+E
Sbjct: 216 ARADAVKAYLSTKGVDDSLLTTSGQGPDRPVASNATSEGRARNRRIE 262


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.131    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,384,588
Number of extensions: 49184
Number of successful extensions: 205
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 4
Length of query: 545
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 455
Effective length of database: 1,193,720
Effective search space: 543142600
Effective search space used: 543142600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 133 (55.8 bits)