BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0041.p
         (267 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309764|ref|YP_003773856.1| 4-oxalocrotonate decarboxylase ...   528   e-151

>gi|300309764|ref|YP_003773856.1| 4-oxalocrotonate decarboxylase
           [Herbaspirillum seropedicae SmR1]
          Length = 280

 Score =  528 bits (1361), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 252/267 (94%), Positives = 262/267 (98%)

Query: 1   LLDARAQSRIIPRISESEPLSVEDAYEIAHNIRNIRVAQGEQPIGRKIGFVVRKNWERYG 60
           LLDARAQS++IPRISESEPLSVEDAYEIAHNIRNIRVAQGEQPIGRKIGFVVRKNWERYG
Sbjct: 14  LLDARAQSKVIPRISESEPLSVEDAYEIAHNIRNIRVAQGEQPIGRKIGFVVRKNWERYG 73

Query: 61  IIDEARIPTWAPMYDATVRFAEDNYGAQSLTGAVQPRIEPEIVFKLGKTPAPGASLLELA 120
           IID+ARIPTWAPMYD TVRFAEDN+G QSLTGAVQPRIEPEIVFKLGKTPAP ASL ELA
Sbjct: 74  IIDDARIPTWAPMYDTTVRFAEDNHGLQSLTGAVQPRIEPEIVFKLGKTPAPNASLEELA 133

Query: 121 DCLEWMAHGFEIVVCPFPNWEFTVADSIAAFGLHGTLIVGEPHVLSSATKHHLPQILASA 180
           DCLEWMAHGFEIVVCPFP WEFTVADSIAAFGLHGTLIVGEPHVLSSA++HHLPQILASA
Sbjct: 134 DCLEWMAHGFEIVVCPFPKWEFTVADSIAAFGLHGTLIVGEPHVLSSASRHHLPQILASA 193

Query: 181 SVSLSCNTESSSVLRAAGFCNDEMDSPLHALWHLHQLLQKQTRFRQLQAGEIISTGTWTD 240
           SVSLSC+TES+SVLRAAGFCNDEMDSPLHALWHLHQLLQKQTRFR+LQAGEII+TGTWTD
Sbjct: 194 SVSLSCSTESASVLRAAGFCNDEMDSPLHALWHLHQLLQKQTRFRKLQAGEIITTGTWTD 253

Query: 241 ACPIEPGQTWTTAFSGVTLPGLTVSFV 267
           ACPIEPGQTWTTAFSGVTLPGLTVSFV
Sbjct: 254 ACPIEPGQTWTTAFSGVTLPGLTVSFV 280


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 791,739
Number of extensions: 30071
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 183
Effective length of database: 1,222,130
Effective search space: 223649790
Effective search space used: 223649790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)