BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0039.p
         (192 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309762|ref|YP_003773854.1| Holliday junction DNA resolvase...   374   e-105

>gi|300309762|ref|YP_003773854.1| Holliday junction DNA resolvase
           DNA-binding subunit [Herbaspirillum seropedicae SmR1]
          Length = 192

 Score =  374 bits (961), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/192 (98%), Positives = 191/192 (99%)

Query: 1   MIGRLSGILLEKIPPNLLVDCQGVGYEVAVPMSTYYNLPGLGEKVTLLTHLAIREDAHIL 60
           MIGRLSGILLEK+PPNLLVDCQGVGYEVAVPMSTYYNLP LGEKVTLLTHLAIREDAHIL
Sbjct: 1   MIGRLSGILLEKLPPNLLVDCQGVGYEVAVPMSTYYNLPALGEKVTLLTHLAIREDAHIL 60

Query: 61  FGFGTAEERNTFKELIKISGVGARTALSILSGMSVADLAQAVTLQEAGRLTRVPGIGKKT 120
           FGFGTAEERNTFKELIKISGVGARTALSILSGMSVADLAQAVTLQEAGRLTRVPGIGKKT
Sbjct: 61  FGFGTAEERNTFKELIKISGVGARTALSILSGMSVADLAQAVTLQEAGRLTRVPGIGKKT 120

Query: 121 AERLLLELKGKLGADLGAVAGVVHSDASADILNALLALGYSDKEATLAMKQVPKDSSVSD 180
           AERLLLELKGKLGADLGAVAGVVHSDASADILNALLALGYSDKEATLAMKQVPKDS+VSD
Sbjct: 121 AERLLLELKGKLGADLGAVAGVVHSDASADILNALLALGYSDKEATLAMKQVPKDSTVSD 180

Query: 181 GIKLALKALSKG 192
           GIKLALKALSKG
Sbjct: 181 GIKLALKALSKG 192


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.135    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 485,585
Number of extensions: 17200
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 112
Effective length of database: 1,241,070
Effective search space: 138999840
Effective search space used: 138999840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)