BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0029.p
         (523 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309756|ref|YP_003773848.1| bifunctional phosphoribosylamin...  1067   0.0  

>gi|300309756|ref|YP_003773848.1| bifunctional
           phosphoribosylaminoimidazolecarboxamide
           formyltransferase/IMP cyclohydrolase transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 523

 Score = 1067 bits (2760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/523 (99%), Positives = 522/523 (99%)

Query: 1   MIKQALISVSDKAGVLDFARALSAMGVNILSTGGTAKLLADNGVPVTEVADYTGFPEMLD 60
           MIKQALISVSDKAGVLDFARALSAMGVNILSTGGTAKLLADNGVPVTEVADYTGFPEMLD
Sbjct: 1   MIKQALISVSDKAGVLDFARALSAMGVNILSTGGTAKLLADNGVPVTEVADYTGFPEMLD 60

Query: 61  GRVKTLHPKVHGGILARRDFPEHVAALEQHGIPTIDMVVVNLYPFQQTVAKDECSLEDAI 120
           GRVKTLHPKVHGGILARRDFPEHVAAL+QHGIPTIDMVVVNLYPFQQTVAK+ECSLEDAI
Sbjct: 61  GRVKTLHPKVHGGILARRDFPEHVAALQQHGIPTIDMVVVNLYPFQQTVAKEECSLEDAI 120

Query: 121 ENIDIGGPAMLRSSAKNHKDVIVICDPTDYEGVLAELKSGGDLPYEKRFALAKKVFAHTA 180
           ENIDIGGPAMLRSSAKNHKDVIVICDPTDYEGVLAELKSGGDLPYEKRFALAKKVFAHTA
Sbjct: 121 ENIDIGGPAMLRSSAKNHKDVIVICDPTDYEGVLAELKSGGDLPYEKRFALAKKVFAHTA 180

Query: 181 QYDGAITNYFTALGEDKQHSTRSAYPSTLNLHFEKVQDMRYGENPHQSAAFYRDIKKVDG 240
           QYDGAITNYFT+LGEDKQHSTRSAYPSTLNLHFEKVQDMRYGENPHQSAAFYRDIKKVDG
Sbjct: 181 QYDGAITNYFTSLGEDKQHSTRSAYPSTLNLHFEKVQDMRYGENPHQSAAFYRDIKKVDG 240

Query: 241 ALANYTQLQGKELSFNNIADADAAWECVKSFDPATEAACVIIKHANPCGVAIGAHPLEAY 300
           ALANYTQLQGKELSFNNIADADAAWECVKSFDPATEAACVIIKHANPCGVAIGA+PLEAY
Sbjct: 241 ALANYTQLQGKELSFNNIADADAAWECVKSFDPATEAACVIIKHANPCGVAIGANPLEAY 300

Query: 301 SKALQTDPTSAFGGIIAFNREVDAAAAEAVAKQFLEVLIAPSFSAEAKQIFAAKQNVRLL 360
           SKALQTDPTSAFGGIIAFNREVDAAAAEAVAKQFLEVLIAPSFSAEAKQIFAAKQNVRLL
Sbjct: 301 SKALQTDPTSAFGGIIAFNREVDAAAAEAVAKQFLEVLIAPSFSAEAKQIFAAKQNVRLL 360

Query: 361 EIPLGTGLNGYDFKRVGGGLLVQSPDAKNVLLADVKVVSKKQPTQQQLQDLMFAWRVAKF 420
           EIPLGTGLNGYDFKRVGGGLLVQSPDAKNVLLADVKVVSKKQPT QQLQDLMFAWRVAKF
Sbjct: 361 EIPLGTGLNGYDFKRVGGGLLVQSPDAKNVLLADVKVVSKKQPTPQQLQDLMFAWRVAKF 420

Query: 421 VKSNAIVFCGNGMTLGVGAGQMSRIDSARIASIKAQNAGLTLAGSAVASDAFFPFRDGLD 480
           VKSNAIVFCGNGMTLGVGAGQMSRIDSARIASIKAQNAGLTLAGSAVASDAFFPFRDGLD
Sbjct: 421 VKSNAIVFCGNGMTLGVGAGQMSRIDSARIASIKAQNAGLTLAGSAVASDAFFPFRDGLD 480

Query: 481 VVVDAGATCVIHPGGSMRDQEVIDAANERDVVMLLTGTRHFRH 523
           VVVDAGATCVIHPGGSMRDQEVIDAANERDVVMLLTGTRHFRH
Sbjct: 481 VVVDAGATCVIHPGGSMRDQEVIDAANERDVVMLLTGTRHFRH 523


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,598,221
Number of extensions: 66450
Number of successful extensions: 187
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 433
Effective length of database: 1,193,720
Effective search space: 516880760
Effective search space used: 516880760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)