BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0023.p
         (165 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309750|ref|YP_003773842.1| hypothetical protein Hsero_0409...   307   3e-85
gi|300312199|ref|YP_003776291.1| phospholipid-binding protein [H...    79   2e-16

>gi|300309750|ref|YP_003773842.1| hypothetical protein Hsero_0409
           [Herbaspirillum seropedicae SmR1]
          Length = 215

 Score =  307 bits (787), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 155/193 (80%), Positives = 159/193 (82%), Gaps = 28/193 (14%)

Query: 1   MDPKTHVALSANRNPHFAWSDLPAGTKSLALVVHDPDVPSRGDDVNQEGKTVPLELPRVD 60
           MDPKTHVALS NRNPHFAWS+LPAGTKSLALVVHDPDVPSRGDDVNQEGKTVPLELPRVD
Sbjct: 23  MDPKTHVALSGNRNPHFAWSELPAGTKSLALVVHDPDVPSRGDDVNQEGKTVPLELPRVD 82

Query: 61  FYHWTLVDIPAGVSEIKAK----------------------------NRXTGWFAGDGDM 92
           FYHWTLVDIPA V+EIKA                             N  TGWFAGDGDM
Sbjct: 83  FYHWTLVDIPASVTEIKAGQFSNGVTARGKPGPAVLGEVMPGARQGINDYTGWFAGDGDM 142

Query: 93  RGDYFGYDGPCPPWNDALVHRYIFTLYALDVEQLPVVGNLEGSVVVTALRDHVLDQASLT 152
           RGDYFGYDGPCPPWNDALVHRYIFTLYALDVEQLPV GNLEGSVVVTALRDHVL+QAS+T
Sbjct: 143 RGDYFGYDGPCPPWNDALVHRYIFTLYALDVEQLPVAGNLEGSVVVTALRDHVLEQASIT 202

Query: 153 GLYTLNPNAVPRS 165
           GLYTLNPNAVPRS
Sbjct: 203 GLYTLNPNAVPRS 215


>gi|300312199|ref|YP_003776291.1| phospholipid-binding protein
           [Herbaspirillum seropedicae SmR1]
          Length = 192

 Score = 79.0 bits (193), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/148 (33%), Positives = 70/148 (47%), Gaps = 22/148 (14%)

Query: 12  NRNPHFAWSDLPAGTKSLALVVHDPDVPSRGDDVNQEGKTVPLELPRVDFYHWTLVDIPA 71
           N++P  +WS  PA TKS A+ V+DPD P+                    ++HWT+ +IPA
Sbjct: 55  NKSPQLSWSGAPADTKSFAITVYDPDAPTGS-----------------GWWHWTVFNIPA 97

Query: 72  GVSEIKAKNRX--TGWFAGDGDMRGDY--FGYDGPCPPWNDALVHRYIFTLYALDVEQLP 127
            V  + A       G  AG    R D+   G+ G CPP  D   HRY F ++AL  E LP
Sbjct: 98  SVRSLPAGATAPGKGLPAGSIQGRTDFGSSGFGGACPPEGDK-PHRYQFVVWALKTETLP 156

Query: 128 VVGNLEGSVVVTALRDHVLDQASLTGLY 155
           +     G+++   L    L  A LT +Y
Sbjct: 157 LDAQASGAMLGFYLNAQALATAKLTAVY 184


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.138    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 602,375
Number of extensions: 26554
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 2
Length of query: 165
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 87
Effective length of database: 1,250,540
Effective search space: 108796980
Effective search space used: 108796980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)