BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0021.p
         (373 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309748|ref|YP_003773840.1| tyrosyl-tRNA synthetase [Herbas...   756   0.0  

>gi|300309748|ref|YP_003773840.1| tyrosyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 453

 Score =  756 bits (1953), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/366 (99%), Positives = 366/366 (100%)

Query: 8   SGQPLRIKLGLDPTAPDLHLGHTVVLNKMRQLQNLGHQVIFLIGDFTSMIGDPSGRNATR 67
           SGQPLRIKLGLDPTAPDLHLGHTVVLNKMRQLQNLGHQVIFLIGDFTSMIGDPSGRNATR
Sbjct: 88  SGQPLRIKLGLDPTAPDLHLGHTVVLNKMRQLQNLGHQVIFLIGDFTSMIGDPSGRNATR 147

Query: 68  PPLSREQIEINAKTYFAQASLVLDPSKTEIRYNSEWCDALGSRGMIQLASRYTVARMMER 127
           PPLSREQIEINAKTYFAQASLVLDPSKTEIRYNSEWCDALGSRGMIQLASRYTVARMMER
Sbjct: 148 PPLSREQIEINAKTYFAQASLVLDPSKTEIRYNSEWCDALGSRGMIQLASRYTVARMMER 207

Query: 128 DDFTKRFKEGTPISVHEFLYPLMQGYDSVALKSDLELGGTDQKFNLLVGRELQKDFGQEP 187
           DDFTKRFKEGTPISVHEFLYPLMQGYDSVALKSDLELGGTDQKFNLLVGRELQKDFGQEP
Sbjct: 208 DDFTKRFKEGTPISVHEFLYPLMQGYDSVALKSDLELGGTDQKFNLLVGRELQKDFGQEP 267

Query: 188 QCILTMPLLEGLDGVEKMSKSKGNYIGITEPANTMFAKVMSISDVMMWRYYELLSFRSMA 247
           QCILTMPLLEGLDGVEKMSKSKGNYIGITEPANTMFAKVMSISDVMMWRYY+LLSFRSMA
Sbjct: 268 QCILTMPLLEGLDGVEKMSKSKGNYIGITEPANTMFAKVMSISDVMMWRYYDLLSFRSMA 327

Query: 248 EIAGYKAEVEAGKNPRDIKVALAQEIVARFHSQQAAEDALADFVNRSKGGIPDDIPEVSL 307
           EIAGYKAEV+AGKNPRDIKVALAQEIVARFHSQQAAEDALADFVNRSKGGIPDDIPEVSL
Sbjct: 328 EIAGYKAEVDAGKNPRDIKVALAQEIVARFHSQQAAEDALADFVNRSKGGIPDDIPEVSL 387

Query: 308 SGAPLGIGQLLKQANLCASTSEALRMVEQGGVRIDGTVISDKGLKVEAGQCVVQVGKRKF 367
           +GAPLGIGQLLKQANLCASTSEALRMVEQGGVRIDGTVISDKGLKVEAGQCVVQVGKRKF
Sbjct: 388 TGAPLGIGQLLKQANLCASTSEALRMVEQGGVRIDGTVISDKGLKVEAGQCVVQVGKRKF 447

Query: 368 ARVTLA 373
           ARVTLA
Sbjct: 448 ARVTLA 453


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,117,427
Number of extensions: 45338
Number of successful extensions: 136
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 286
Effective length of database: 1,207,925
Effective search space: 345466550
Effective search space used: 345466550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)