BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0019.p
         (212 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309747|ref|YP_003773839.1| membrane metalloendopeptidase [...   437   e-124
gi|300309687|ref|YP_003773779.1| transmembrane metalloendopeptid...    64   7e-12

>gi|300309747|ref|YP_003773839.1| membrane metalloendopeptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 506

 Score =  437 bits (1125), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 206/212 (97%), Positives = 211/212 (99%)

Query: 1   VLAGEFDNAGNRYQAVWFSDPASKTGGGGYYAFDGKSLKKAFLKSPLAFTRISSGFSMRL 60
           VLAGEFDNAGNRYQAVWFSDPASKTGGGGYYAFDGKSLKKAFLKSPLAFTRISSGFSMRL
Sbjct: 295 VLAGEFDNAGNRYQAVWFSDPASKTGGGGYYAFDGKSLKKAFLKSPLAFTRISSGFSMRL 354

Query: 61  HPILGQWKQHTGVDFAAPTGTPIHAAADGVVDFVGQQNGYGNIVVIKHWSGYSTAYGHMS 120
           HPILG+WKQHTGVDFAAPTGTPIHAAADGVVDFVG+QNGYGNIVVIKHWSGYSTAYGHMS
Sbjct: 355 HPILGKWKQHTGVDFAAPTGTPIHAAADGVVDFVGKQNGYGNIVVIKHWSGYSTAYGHMS 414

Query: 121 RFAPNIKKGMKVSQNDVIGFVGMTGWATGPHLHYEFRVNNQPRNPLSVEVPNNQALTGPQ 180
           RFAP+IKKGMKVSQNDVIGFVGMTGWATGPHLHYEFRVNNQPRNPLSV+VPNNQALTGPQ
Sbjct: 415 RFAPDIKKGMKVSQNDVIGFVGMTGWATGPHLHYEFRVNNQPRNPLSVDVPNNQALTGPQ 474

Query: 181 LQRFRTVAADMQHRMAMLRVPGAPDVKLAAAK 212
           LQRFRTVAADMQHRMAMLRVPGAPDVKLA+ K
Sbjct: 475 LQRFRTVAADMQHRMAMLRVPGAPDVKLASVK 506


>gi|300309687|ref|YP_003773779.1| transmembrane metalloendopeptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 325

 Score = 64.3 bits (155), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 66/133 (49%), Gaps = 4/133 (3%)

Query: 35  GKSLKKAFLKS--PLAFTRISSGFSMRLHPILGQWKQHTGVDFAAPTGTPIHAAADGVVD 92
           G  +K   L +  P+     SS F  RL P  G    H G+DF AP GT I AAA GVV 
Sbjct: 171 GDKIKSRLLPTNQPVNVAYNSSSFGWRLDPFTGHNAFHEGLDFPAPVGTRIVAAAAGVVI 230

Query: 93  FVGQQNGYGNIVVIKHWSGYSTAYGHMSRFAPNIKKGMKVSQNDVIGFVGMTGWATGPHL 152
                  +GN++ I H +   T Y H SR    +K G  V +   +  VG TG +TG HL
Sbjct: 231 ASEYHYQFGNMLEIDHGNNIITRYAHASRLF--VKVGDIVKRGQHVADVGSTGRSTGAHL 288

Query: 153 HYEFRVNNQPRNP 165
           H+E R+    ++P
Sbjct: 289 HFEVRIRGIAQDP 301


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 771,117
Number of extensions: 32929
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 3
Length of query: 212
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 131
Effective length of database: 1,236,335
Effective search space: 161959885
Effective search space used: 161959885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)