BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0018.p
         (382 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309746|ref|YP_003773838.1| anhydro-N-acetylmuramic acid ki...   617   e-178

>gi|300309746|ref|YP_003773838.1| anhydro-N-acetylmuramic acid
           kinase [Herbaspirillum seropedicae SmR1]
          Length = 375

 Score =  617 bits (1591), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 314/376 (83%), Positives = 333/376 (88%), Gaps = 10/376 (2%)

Query: 7   LTIGLMSGTSLDGVDGVLAAFDGQTISATLAAAYVPFPAHLRADLMALQAAGPNEIEREA 66
           L IGLMSGTSLDGVDGVLA F GQ++SATLAAAYVPFP HLRADLMALQAAGPNEIEREA
Sbjct: 10  LYIGLMSGTSLDGVDGVLADFQGQSVSATLAAAYVPFPPHLRADLMALQAAGPNEIEREA 69

Query: 67  LAANALAVHYADCVAQLLLQAGKTAADVHLVGVHGQTIRHRPELGFTRQSNNPALLAELC 126
           +AANALAVHYADCVAQLLLQ GK+AA + +VGVHGQTIRHRPELGFTRQ+NN ALLAEL 
Sbjct: 70  MAANALAVHYADCVAQLLLQTGKSAAAIRMVGVHGQTIRHRPELGFTRQTNNAALLAELS 129

Query: 127 NIDVVADFRSRDVAAGRPLLLGGGRGGQGAPLVPAFHRAIFGDAAQSRVVVNIGGIANIS 186
            ID+VADFRSRDVAAG          GQGAPLVPAFHRA+FGDAAQSRVVVNIGGIANIS
Sbjct: 130 GIDIVADFRSRDVAAG----------GQGAPLVPAFHRALFGDAAQSRVVVNIGGIANIS 179

Query: 187 ILPAGEDGAYGFDTGPGNALMDGWIHLHQQRAYDANGDWGASGQVHAGLLAQLRDEPFFR 246
           ILPAG++ AYGFDTGPGNALMDGWIHLHQQR+YD NGDWGASGQVH GLL QLR+E FF 
Sbjct: 180 ILPAGKEEAYGFDTGPGNALMDGWIHLHQQRSYDINGDWGASGQVHPGLLTQLREEAFFH 239

Query: 247 LPPPKSSGRDLFHLDWLQAALLRTGAAIAPEDVQATLTLLTASTIADAIVAHAPAAQQVY 306
            PPPKSSGRDLFHLDWLQAALLRTG  +AP DVQATL +LTA+TIADAI  HA  A QVY
Sbjct: 240 APPPKSSGRDLFHLDWLQAALLRTGQQVAPADVQATLAMLTANTIADAIKLHAADAGQVY 299

Query: 307 VCGGGAENAFLMRLLQQQLDGRATVQSTAALGVAAQHVEALAFAWLARRFDLRLPGNLPA 366
           VCGGGAENA LMRLL QQL+GRA V+STAALGVA QHVEALAFAWLA+RFD RL GNLPA
Sbjct: 300 VCGGGAENALLMRLLGQQLEGRAEVRSTAALGVAPQHVEALAFAWLAQRFDQRLAGNLPA 359

Query: 367 VTGARGLRVLGALYPA 382
           VTGARG RVLGALYPA
Sbjct: 360 VTGARGPRVLGALYPA 375


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,170,230
Number of extensions: 47031
Number of successful extensions: 167
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 295
Effective length of database: 1,207,925
Effective search space: 356337875
Effective search space used: 356337875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)